[jira] [Commented] (AIRAVATA-465) ability to interact with outputs from individual tasks while executing

[ https://issues.apache.org/jira/browse/AIRAVATA-465?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=14080260#comment-14080260 ] Pamidighantam, Sudhakar V commented on AIRAVATA-465: I will be out

RE: Separate Thrift services- Code restructure

I am starting to look at Airavata with a background of having used an old snapshot in paramchem project. Is there a place I can go to learn the current organization of the development. Thanks, Sudhakar. From: Shameera Rathnayaka [mailto:shameerai...@gmail.com] Sent: Tuesday, October 28, 2014

Re: access to wiki

, Sudhakar V wrote: I would like to deposit some scripts toward generalization in app catalog and gfac design/implementation and would need access to the wiki. Please let me know when this is ready. Thanks, Sudhakar.

Re: access to wiki

. Marlon On 11/24/14, 3:14 PM, Pamidighantam, Sudhakar V wrote: Yes. it is pamidigs. Thanks, Sudhakar. On Nov 24, 2014, at 1:53 PM, Marlon Pierce marpi...@iu.edu wrote: Hi Sudhakar, did you create a wiki account? Please send me your username and I'll give you the required permissions

Fwd: [sgg-l] XBaya Quick Start Tutorial is in Airavata wiki

...@list.indiana.edu Please take this to dev@airavata. Looks like * Some services (derby) were not properly shutdown from a previous test, and/or * Not all services were started correctly (zookeeper) Marlon On 12/1/14, 11:05 AM, Pamidighantam, Sudhakar V wrote: The version was from just before break

Re: [sgg-l] XBaya Quick Start Tutorial is in Airavata wiki

an issue. Thanks, Shameera. On Mon, Dec 1, 2014 at 12:59 PM, Pamidighantam, Sudhakar V spami...@illinois.edumailto:spami...@illinois.edu wrote: Begin forwarded message: From: Marlon Pierce marpi...@iu.edumailto:marpi...@iu.edu Subject: Re: [sgg-l] XBaya Quick Start Tutorial is in Airavata wiki Date

Re: Improvements to Experiment input data model in order to support Gaussian application

Chaturi: Thanks for these suggestions. One question I have is whether we should look at some of the input files in the set of applications currently under testing to come up with these requirements. There may be additional requirements in some of the inputs. Of course we can incrementally

Re: Improvements to Experiment input data model in order to support Gaussian application

, Sudhakar. On Dec 8, 2014, at 10:23 AM, Marlon Pierce marpi...@iu.edu wrote: The more examples, the better. I'd like to find the right balance between understanding the problem space and making incremental progress. Marlon On 12/8/14, 10:38 AM, Pamidighantam, Sudhakar V wrote: Chaturi

Re: Improvements to Experiment input data model in order to support Gaussian application

We can not expect users or applications to change behavior for Airavata. It is up to us enable applications and users as they are now. As you have seen several applications have system input parameters inside a master input file and they are used by the application and required to be used in

Re: DataCat Project Progress

Supun: I support these goals. I am available for you to engage with you and anything I can do to expedite the project please let me know. Even if you think I can not, do please ask anyway. I have written the original parsers in perl myself and have directed others when the Cup/JFLex system was

Re: DataCat Project Progress

configure and test the parsers by your self. On Thu, Dec 11, 2014 at 7:42 PM, Pamidighantam, Sudhakar V spami...@illinois.edumailto:spami...@illinois.edu wrote: Supun: I support these goals. I am available for you to engage with you and anything I can do to expedite the project please let me know

Re: [VOTE] Apache Airavata release 0.14 - RC1

) at com.rabbitmq.client.impl.AMQChannel.handleFrame(AMQChannel.java:91) at com.rabbitmq.client.impl.AMQConnection$MainLoop.run(AMQConnection.java:550) ... 1 more On Dec 22, 2014, at 4:50 PM, Pamidighantam, Sudhakar V spami...@illinois.edumailto:spami...@illinois.edu wrote: Followed the instruction in the Quick-Start tutorial

Re: Saving the content of the STDOUT and STDERR to database

If the STDOUT becomes large it is not good to store in a database table. Perhaps the data base can contain a pointer(URI) to the file. Sudhakar. On Jan 9, 2015, at 5:01 PM, Chathuri Wimalasena kamalas...@gmail.commailto:kamalas...@gmail.com wrote: Hi All, At the moment, we are saving the

Re: [jira] [Commented] (AIRAVATA-1635) [GSoC] Integrate Airavata Java Client SDK with GridChem Client

Suresh: Could you please add Dimuthu under project ID 596 using “ add new user “ function under Management menu in the consult portal www.gridchem.org/consult. Thanks, Sudhakar. On Mar 26, 2015, at 11:16 AM, Dimuthu Upeksha (JIRA) j...@apache.org wrote: [

Re: [jira] [Commented] (AIRAVATA-1635) [GSoC] Integrate Airavata Java Client SDK with GridChem Client

Dimuthu: This is a standard format for an application named Gaussian. This file is parsed for various job requirements at the middleware and resource stages for proper job submission. There are several applications each of which have their own standard ways of setting the job parameters. Also

Re: [jira] [Commented] (AIRAVATA-1635) [GSoC] Integrate Airavata Java Client SDK with GridChem Client

, So if we port this use case to Airavata, we don't have to change the file at client side. Only requirement is to pass this file to Airavata through its API. Am I correct? On Fri, Mar 27, 2015 at 5:23 PM, Pamidighantam, Sudhakar V spami...@illinois.edu wrote: Dimuthu: This is a standard

Re: [API] Assigning Computational Resources

Just to clarify further, there are two kinds of projects … one is a research project under which many experiments can be collected. On the organization of users side, there may be a project under which many users can be grouped lead by a PI ( principal investigator). Perhaps this distinction

Re: [API] Assigning Computational Resources

think according to Eroma's clarification, it does not depend on high level project management. Thanks, Dimuthu On Sun, Apr 19, 2015 at 6:21 PM, Pamidighantam, Sudhakar V spami...@illinois.edu wrote: Just to clarify further, there are two kinds of projects … one is a research project

Re: [API] Assigning Computational Resources

the users and group wide allocation. Suresh On Apr 19, 2015, at 11:53 AM, Pamidighantam, Sudhakar V spami...@illinois.edu wrote: Well it definitely depends on the allocation available. The (user) project allocation should not be 0 or negative for an experiment to run. As experiments

Re: Register a remote computational resource steps

Suresh: I think we need to have a local deployment of this test PHP interface and instructions to use that instance. I will talk to Eroma about creating these in a document similar to XBAYA-Quick-Start tutorial. This way any body can deploy a local PHP instance, register resources and

Re: chessisNumber?

I have not heard such a requirement in LSF. Can somebody explain how this is used. Sudhakar. On Jun 18, 2015, at 7:56 AM, Pierce, Marlon marpi...@iu.edumailto:marpi...@iu.edu wrote: Is this chassis number? From: Chathuri Wimalasena kamalas...@gmail.commailto:kamalas...@gmail.com Reply-To:

Re: chessisNumber?

...@gmail.commailto:kamalas...@gmail.com wrote: According to LSF xslt file, chassis name is specified as #BSUB -m c. May be Lahiru can give more insight. Thanks.. Chathuri On Thu, Jun 18, 2015 at 9:16 AM, Pamidighantam, Sudhakar V spami...@illinois.edumailto:spami...@illinois.edu wrote: I have not heard

Re: [GSoC] Hangout - Airavata and PGA Overview

8 CT is fine for me. Sudhakar. On May 28, 2015, at 7:05 AM, Suresh Marru sma...@apache.orgmailto:sma...@apache.org wrote: Hi All, Will 9 am eastern time (6.30 pm IST) tomorrow (Friday 29th May) work for every one for a google hangout? After a brief overview of Airavata and PGA, lets all of

Re: launching a job through Airavata to Mesos cluster

Pankaj: If mesos is a scheduler, perhaps Airavata could be enhanced to submit jobs to using mesos scheduler ( similar to slurm/pbs/lsf scheduler). Is this what you are referring to? Thanks, Sudhakar. On Oct 28, 2015, at 11:11 AM, Pierce, Marlon > wrote:

Re: Airavata installation to submit a job in Mesos/Maraton cluster

Pankaj; is your mesos cluster registered in the PGA as computer resource. Is the hello world application catalog entries made. Can you do this in a PGA using the gw56 ( I assume you have admin privileges). If not somebody can do this for you. Thanks, Sudhakar. On Dec 5, 2015, at 1:26 PM, Pankaj

Re: [VOTE] Apache Airavata Release 0.15 - RC1

+1 for the Apache Airavata 0.15 release. Thanks, Sudhakar. On Dec 4, 2015, at 5:19 AM, Suresh Marru wrote: > Apache Airavata PMC is pleased to call for a vote on the following Apache > Airavata 0.15 release candidate artifacts: > > Detailed change log/release notes: > >

Re: Required field 'gatewayId' was not present!

Is it possible to provide a default gatewayID for a given hosted Airavata service to avoid this problem. Of course if somebody wants a define it a particular war then the default can be changed to what the gateway wants to set it to. Thanks, Sudhakar. On Nov 28, 2015, at 1:35 PM, Pankaj Saha

Re: Airavata 0.16 Release Planning

None. +1 for the release. Thanks, Sudhakar. On Jun 3, 2016, at 6:55 AM, Suresh Marru > wrote: I gated the release earlier but this task was long done. Any objections to move forward with 0.16 release? Suresh On Mar 30, 2016, at 2:53 PM, Suresh

Re: Airavata 0.16 Release Planning

+1 Sudhakar. On Mar 28, 2016, at 10:20 AM, Shameera Rathnayaka > wrote: +1 On Mon, Mar 28, 2016 at 10:50 AM Suresh Marru > wrote: Hi All, Before we go too far, how about we call a feature freeze

Re: Refactor JIRA Component list

Could you name them devop_tools. Thanks, Sudhakar. On Aug 4, 2016, at 10:58 AM, Shameera Rathnayaka > wrote: Hi Amila, Thanks for your feedback, agree with your 1 and 2 thoughts, let's remove those two components. What I mean by dev-tools

Re: Spark context diagrams

Apoorv: Can you create these diagrams with creately or some software and annotate them better. It is a bit difficult for old eyes to read them.. Thanks, Sudhakar. On May 26, 2017, at 11:25 AM, Apoorv Palkar > wrote: Hey I've been working

Re: Using Docker images to run Thrift

+1 any thing to reduce manual installation and corresponding issues would be welcome. There should be testing to ensure this went through correctly and suggest practical ways to correct any shortcomings. Thanks, Sudhakar. On Jun 7, 2017, at 3:02 PM, Christie, Marcus Aaron

Re: Welcome Marcus Christie as Airavata PMC member

Congratulation to Marcus and welcome as PMC. Thanks, Sudhakar. > On Nov 17, 2017, at 2:11 PM, Suresh Marru wrote: > > Hi All, > > The Project Management Committee (PMC) for Apache Airavata has asked Marcus > Christie to become a PMC member based on his contributions to the

Re: Running Airavata in standalone mode

I believe these kind of error are seen many times if the deployment instructions are not followed. I think it is time to capture them and suggest actionable solutions or refer back to the deployment instructions. Thanks, Sudhakar. On Dec 8, 2017, at 7:40 AM, DImuthu Upeksha

Re: Getting error while trying to clone experiment

Cloning requires access to the data (inputs etc) from the previous experiment for reuse that are usually at the service host. Perhaps the permissions may be the issue in your case. Sudhakar. On Dec 27, 2017, at 1:52 PM, Saurabh Agrawal >

Re: Getting error while trying to clone experiment

. Also, what is the best way to provide permission on a string? On Wed, Dec 27, 2017 at 2:39 PM, Pamidighantam, Sudhakar V <spami...@illinois.edu<mailto:spami...@illinois.edu>> wrote: Cloning requires access to the data (inputs etc) from the previous experiment for reuse that are usu

Re: [ANNOUNCE] Welcome Dimuthu Upeksha as Airavata PMC member and committer

Congratulations and Welcome to PMC Dimuthu. Sudhakar. > On Mar 6, 2018, at 10:32 AM, Suresh Marru wrote: > > Hi All, > > The Project Management Committee (PMC) for Apache Airavata has asked Dimuthu > Upeksha to become a committer and PMC member based on his contributions to

Re: Metascheduler work

I thought Pankaj presented a way to implement MPI executions through mesos more recently. He may want to comment on this.. Thanks, Sudakar. From: Marlon Pierce Reply-To: Date: Monday, December 17, 2018 at 8:52 AM To: "dev@airavata.apache.org" Subject: Re: Metascheduler work Hi Dimuthu,

Re: Unused modules

What is the estimated timeline for enforceable allocation management to be available in Airavata, 2019, 2020? Thanks, Sudhakar. From: DImuthu Upeksha Reply-To: "dev@airavata.apache.org" Date: Friday, November 30, 2018 at 8:30 AM To: "dev@airavata.apache.org" Subject: Re: Unused modules Hi

Re: Error installing Airavata+RabbitMQ+Zookeeper

Can you try a VM with more memory (not disk space) say 8GB or so. Thanks, Sudhakar. From: "Achanta, Sai Rohith" Reply-To: "dev@airavata.apache.org" Date: Monday, March 11, 2019 at 10:20 PM To: "dev@airavata.apache.org" Subject: Error installing Airavata+RabbitMQ+Zookeeper Hi team, I’m

Some Data requirements

Please see some data needs we are seeing in the current gateways. Some of these are handled but several require additional development, integration and operational changes. Specific use cases could/should be documented as well. This may not cover all unmet needs and other are encouraged to

Re: SMILES Proto Schema

Bhavesh: 1. We need to pick a primary key. SMILES string could be a good one but is not absolutely needed to be. Also sometimes it is difficult to auto-generate SMILES strings for molecules. We can choose another one such as name but we need to consistently and uniquely use the name across

Re: Regarding Airavata Seagrid Rich Client

Aishwarya: Has a code been committed about this to git yet? Could you please point to the repo. Thanks, Sudhakar. From: Aishwarya Sinhasane Date: Tuesday, June 21, 2022 at 9:21 PM To: dev@airavata.apache.org Subject: Regarding Airavata Seagrid Rich Client Hello Everyone, I tried to make a

Re: SSH access to the SEAGrid database.

Bhavesh: I could login into bhav...@gridchem.uits.iu.edu fine with my ssh key. Either your key is bad or something. Can you send me another ssh public key. Please send the output for ssh -vv

Re: Gaussian16 experiment failure.

Usually this happens when there is a network issue. Please retry with different compute resource if Expanse is not reachable for some reason. Thanks, Sudhakar. From: Bhavesh Asanabada Date: Wednesday, July 13, 2022 at 12:30 AM To: dev@airavata.apache.org Subject: Gaussian16 experiment

Re: Regarding Airavata Seagrid Rich Client

try to fix it. Thank you Aishwarya Sinhasane On Thu, Jul 28, 2022, 12:57 PM Pamidighantam, Sudhakar V mailto:spami...@illinois.edu>> wrote: Aishwarya: I am getting this error message when I try to load the JSMol Editor. Can this be addressed. Thanks, Sudhakar. npm start > electro

Re: SMILES Proto Schema

Bhavesh: When I tried to run java package I got this error. Do you know what could be missing? Thanks, Sudhakar. [INFO] Changes detected - recompiling the module! [INFO] Compiling 38 source files to

Re: Regarding Airavata Seagrid Rich Client

ldefense.com/v3/__https:/github.com/apache/airavata-sandbox/pull/83__;!!DZ3fjg!6dk7oQM3gRRFhxM9R-pq4Iv-7z1mJw4SdTXjpXj9PiV_umuOFJ4O64F2xveJrVIQq2V7iraP5cNASt2nzaRqQQiwC0o-Pg$> Thanks and Regards Aishwarya Sinhasane On Wed, 20 Jul 2022 at 15:33, Pamidighantam, Sudhakar V mailto:spami...@il

Re: Regarding Pre and Post job commands in Airavata

Dimuthu: For gateway with specific applications the application or executable needs to be transferred along with the user inputs to the condor pool, which may require unpacking a tar ball or other mechanisms and identify the actual executable by a driver script. The driver script is the

Re: Priti Singh GSoC Proposal

Priti: You refer to a Form in the text. Please specify that it is a profile information form that user is required to fill. For some gateways this may be optional. The rest looks reasonable to me. Thanks, Sudhakar. From: Priti Singh Date: Tuesday, April 4, 2023 at 2:33 AM To:

Re: [External] [DISCUSS] New name for MFT

Nauka Another one for carrying (good and people over water) networks Thanks, Sudhakar. From: Isuru Ranawaka Reply-To: "dev@airavata.apache.org" Date: Tuesday, January 31, 2023 at 5:43 PM To: "dev@airavata.apache.org" Subject: Re: [External] [DISCUSS] New name for MFT Great ideas.. few more

Re: questions regarding dashboards to get quick statistics.

Saurav: While you are at it, Please do a pull request for the documentation as well. Thanks, Sudhakar. From: Lahiru Jayathilake Date: Sunday, June 4, 2023 at 11:53 AM To: saurav kumar jha Cc: dev@airavata.apache.org , sma...@apache.org , Abeysinghe, Eroma Subject: Re: questions regarding

Re: Architecture for Cybershuttle Orchestration App

Praneeth, We have an example in the SEAGrid electron client that you may want to look at. Please see the link from sharepoint below. Please let me know if you want a quick demo of this.