It can wait if the current models work.
Sent from my iPhone
> On Nov 10, 2014, at 12:18 PM, "Chen, Pei"
> wrote:
>
> Chen,
> Does this need to go into this upcoming release or can it wait till the next
> one?
>
> Sent from my iPhone
>
>> On Nov 10, 2014, at 10:20 AM, "c...@apache.org" wrot
Thanks for creating all those mockups! Agree with James and Tim, I prefer
option 4 for its clear layout and the emphasis of ctakes' pros.
Happy New Year!
Best,
Chen
-Original Message-
From: Masanz, James J. [mailto:masanz.ja...@mayo.edu]
Sent: Wednesday, December 31, 2014 3:25 PM
To: de
Yes, Sean. I encountered a compilation error as listed bellow:
[INFO] Apache cTAKES Resources lvg ... FAILURE [3.072s]
Caused by: java.io.IOException: Negative seek offset
at java.io.RandomAccessFile.seek(RandomAccessFile.java:555)
at
org.codehaus.plexus.archiver.zip.ZipFile.p
Hi Andrey,
The CDA sectionizer is a rule/RegEx based method for section header
matching. It follows the consolidated CDA/HL7 standard for defining a
section header template. The template format is:
HL7 template id, LOINC Section Code, and a list of n header names (case
insensitive, n can be as man
I have checked to run the temporal module of rc3 for event-event,
event-time, and DocTimeRel annotators. All evaluation scripts returned
proper outputs. Speaking of the temporal part:
+1
Best,
Chen
On 4/17/17, 11:47 PM, "Pei Chen" wrote:
>This is a call for a vote on releasing the following
Dear cTAKES Team,
Forgive me if I am wrong. I tried the ³release can be download from² link
and it linked me to the download page of cTAKES, which is still at version
3.2.2?
I tried ³User Installation² and ³Source Code² links, both were pointing to
3.2.2. Please help double check. Many thanks!
Be
Hi Erin,
The warning is saying that Time-class feature of a temporal expression is
not found. The time-class (e.g. ³date², ³time², ³duration², ³quantifier²,
³prepostexp², and ³set²) of a temporal expression is a standard feature we
can get from gold standard thyme annotation
(http://clear.colorado
One possible reason is that ³city² is the closest event to the nearby
temporal expression, ³4 years ago². Our temporal system, especially the
event-time model would favor closest relation pairs.
Best,
Chen
On 5/11/17, 2:12 PM, "Dligach, Dmitriy" wrote:
>Hi Erin,
>
>I would expect the relation a
Hi Gandhi,
As for the error in EventTimeRelationAnnotator, the reason is that the
time-class attribute value for an temporal expression mention is missing.
When we develop this annotator, we used time-class in the gold annotation
as a feature to help the classifier. If this feature is missing, the
Hi Gandhi,
It looks like the newest version is picking up the temporal expression
complete, ³12th June 2018². The previous version only partially pick up
³June 2018². It is due to the the improvement of the timex annotator.
As for the relations(tlinks), the current distributed TLINK model is a
con
to do with commented out
>'FullTemporalExtractionPipeline.CopyPropertiesToTemporalEventAnnotator'
>in ' TemporalSubPipe.piper'?
>
>Thanks again.
>
>Regards,
>Gandhi
>
>-Original Message-
>From: Lin, Chen [mailto:chen@childrens.harvard.edu]
>S
after the
>tlink annotation, not before.
>
>-Original Message-
>From: Lin, Chen [mailto:chen@childrens.harvard.edu]
>Sent: Monday, February 12, 2018 10:33 AM
>To: dev@ctakes.apache.org
>Subject: Re: Regarding cTAKES Tlinks [EXTERNAL] [SUSPICIOUS]
>
>Mmm. Frankly, I do
you wrote that improvement!
>hurrah!
>
>I thank you for taking the time to answer questions on temporal matters,
>as well as being one of the developers involved working on the module!
>
>Cheers,
>Sean
>
>-Original Message-
>From: Lin, Chen [mailto:chen
Thank you, Sean, for being the biggest guru of cTAKES! I feel proud to
take one tiny part in the big thing, and has shared it on my linkedIn post.
Best,
Chen
On 3/28/19, 9:52 AM, "Finan, Sean"
wrote:
>Thank you all for your efforts on ctakes!
>
>
>https://urldefense.proofpoint.com/v2/url?u=htt
Dear ctakes developers,
Just want to share a quick tip that "Maven/Update Project" seems a general fix
for common type errors. Thanks to Pei who just used this option to fix my type
errors.
Best,
Chen
Chen Lin
Applications Development Specialist
Children's Hospital Boston
Informatics Program
3
Dear ctakes developers,
May I please have your help on a drug-ner question? I am wondering what the
difference between MedicationDosage and MedicationStrength is? My goal is to
extract the dosage information for a drug called "methothrexate". I used
MedicationStrength to get the number and unit
Dear Sean and Co.,
I was using an older version of cTAKES (Revision: 1479606, the version right
before type-system changed for adding more eventMentioins from entities) to
process some notes. One note seems trigger DrugMentionAnnotator to an infinite
loop. The error message was attached below.
Hi Chase,
I have observed this similar issue in my use case, for example,
"... #1 Bottle(s)metformin PO undefined Methotrexate (ORAL) 15 MG (2.5MG TABLET
Take 6) PO QWEEK , 6 tablets, once a week #24 Tablet(s)Metrocream
(METRONIDAZOLE 0.75% Cream)..."
I thought the dosage number for Methotrexat
Thank you! It is good to know. I am using trunk, at r1548332.
Best,
Chen
-Original Message-
From: Masanz, James J. [mailto:masanz.ja...@mayo.edu]
Sent: Monday, December 23, 2013 11:51 AM
To: 'dev@ctakes.apache.org'
Subject: RE: [jira] [Created] (CTAKES-278) UMLS user and password should
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