Hello,
I am running cTAKES from command line and installed it as user mode. Now I
really need to make sure it works offline also. Found instruction for it
like load Umls data to MySQL and use JdbcConceptFactory instead of
UmlsJdbcConceptFactory. I went trough xml configuration file and couldn't
fi
2018 9:33 AM
To: dev@ctakes.apache.org
Subject: Re: using umls dictionary lookup offline [EXTERNAL] [SUSPICIOUS]
[SUSPICIOUS]
Again, not legal advice, but this is my rule of thumb:
- If you had to enter your UMLS credentials to download the copy of the
UMLS you're using with cTAKES, then you do
Well put,
Thanks Tim!
-Original Message-
From: Miller, Timothy [mailto:timothy.mil...@childrens.harvard.edu]
Sent: Thursday, February 15, 2018 9:33 AM
To: dev@ctakes.apache.org
Subject: Re: using umls dictionary lookup offline [EXTERNAL] [SUSPICIOUS]
[SUSPICIOUS]
Again, not legal
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> OqdTDRRNQXipowRLRjx0ibQrHEo8uYx6674h&m=kLwhTWLiycm7tPA3QG6BD8swPRXxgO
> TpWHc6l_TCKoA&s=f93gnvK3arVWEPL3tqvfdoQ-nUFRdLSsYZ7TNwVZhxo&e=
> [7] https://urldefense.proofpoint.com/v2/url?u=https-3A__cwiki.apache
> .org_confluence_display_CTAKES_Default-2BClinical-
> 2BPipeline&d=Dw
ail.com]
Sent: Thursday, February 15, 2018 6:43 AM
To: dev@ctakes.apache.org
Subject: RE: using umls dictionary lookup offline [EXTERNAL]
@Sean,
is it not a license obligation to validate umls credentials on every load of
the pipeline ?
I have offline umls data on elasticsearch and a customized
* classes. They will work out-of-box with the default dictionary.
>
> Sean
>
> -Original Message-
> From: Gandhi Rajan Natarajan [mailto:gandhi.natara...@arisglobal.com]
> Sent: Wednesday, February 14, 2018 11:08 AM
> To: dev@ctakes.apache.org
> Subject: RE: using
Hi Sean, Thanks for the additional info.
Regards,
Gandhi
-Original Message-
From: Finan, Sean [mailto:sean.fi...@childrens.harvard.edu]
Sent: Wednesday, February 14, 2018 9:42 PM
To: dev@ctakes.apache.org
Subject: RE: using umls dictionary lookup offline [EXTERNAL]
Hi Gandhi, all
Razu,
I'm not totally sure if this is up-to-date, but here's a wiki page that I
hope will be helpful.
https://cwiki.apache.org/confluence/display/CTAKES/UMLS+MS+SQL+Server+Installation
Note that you will have to have a UMLS license account to be able to
download UMLS data. You can sign up for it
Rajan Natarajan [mailto:gandhi.natara...@arisglobal.com]
Sent: Wednesday, February 14, 2018 11:08 AM
To: dev@ctakes.apache.org
Subject: RE: using umls dictionary lookup offline [EXTERNAL]
Hi Razu,
You can load the UMLS data in database like MySQL and use JdbcConceptFactory
inste
Hi Razu,
You can load the UMLS data in database like MySQL and use JdbcConceptFactory
instead of UmlsJdbcConceptFactory.
Regards,
Gandhi
-Original Message-
From: Razu Sharif [mailto:razu.cse10.r...@gmail.com]
Sent: Wednesday, February 14, 2018 2:53 PM
To: dev@ctakes.apache.org
Subject:
> From: vijay garla [mailto:vnga...@gmail.com]
> Sent: Monday, November 18, 2013 11:05 AM
> To: dev@ctakes.apache.org
> Subject: Re: using umls dictionary lookup offline?
>
> No need to write any new annotator, just point
> org.apache.ctakes.dictionary.lookup.ae.DictionaryLoo
No need to write any new annotator, just point
org.apache.ctakes.dictionary.lookup.ae.DictionaryLookupAnnotator at the
UMLS HSQL DB.
The UMLS password check is a very weak chastity belt. For ytex, we make
umls resources available via a UTS password protected website - to get the
resources the use
using umls dictionary lookup offline?
! NOTEWORTHY !
In the iDASH download you supply your UMLS credentials, they check your cred,
and give you the whole NLP stack LICENSED and all.
This includes cTAKES.
Interesting, right?
On Nov 15, 2013, at 5:50 AM, "Chen, Pei" wrote:
> Hi M
! NOTEWORTHY !
In the iDASH download you supply your UMLS credentials, they check your cred,
and give you the whole NLP stack LICENSED and all.
This includes cTAKES.
Interesting, right?
On Nov 15, 2013, at 5:50 AM, "Chen, Pei" wrote:
> Hi Matt,
> The license validation is ultimately the
Hi Matt,
The license validation is ultimately the responsibility of the user.
So if you ensure you have the license, technically, what you can do is just
write a Annotator that just uses those resources directly :).
--Pei
> -Original Message-
> From: Coarr, Matt [mailto:mco...@mitre.org
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