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Stian Soiland-Reyes updated TAVERNA-730:
Description: Update specification at
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Stian Soiland-Reyes updated TAVERNA-812:
Fix Version/s: language 0.15.0
parent 1
Release Taverna
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Stian Soiland-Reyes commented on TAVERNA-787:
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Draft is at
Stian Soiland-Reyes created TAVERNA-812:
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Summary: Release Taverna Language 0.15.0-incubating
Key: TAVERNA-812
URL: https://issues.apache.org/jira/browse/TAVERNA-812
Project: Apache Taverna
Stian Soiland-Reyes created TAVERNA-825:
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Summary: Release Candidate for taverna-maven-parent
Key: TAVERNA-825
URL: https://issues.apache.org/jira/browse/TAVERNA-825
Project: Apache Taverna
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Stian Soiland-Reyes reassigned TAVERNA-812:
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Assignee: Stian Soiland-Reyes
Release Taverna Language 0.15.0-incubating
Stian Soiland-Reyes created TAVERNA-826:
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Summary: Release candidate for taverna-language
Key: TAVERNA-826
URL: https://issues.apache.org/jira/browse/TAVERNA-826
Project: Apache Taverna
Stian Soiland-Reyes created TAVERNA-828:
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Summary: Release taverna-language to dist.apache and Maven repo
Key: TAVERNA-828
URL: https://issues.apache.org/jira/browse/TAVERNA-828
Project: Apache
Stian Soiland-Reyes created TAVERNA-829:
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Summary: Create/update Download page
Key: TAVERNA-829
URL: https://issues.apache.org/jira/browse/TAVERNA-829
Project: Apache Taverna
Issue
Stian Soiland-Reyes created TAVERNA-833:
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Summary: Update git tags
Key: TAVERNA-833
URL: https://issues.apache.org/jira/browse/TAVERNA-833
Project: Apache Taverna
Issue Type: Sub-task
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Stian Soiland-Reyes commented on TAVERNA-812:
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Yes - everything else
Stian Soiland-Reyes created TAVERNA-827:
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Summary: Vote for taverna-language release
Key: TAVERNA-827
URL: https://issues.apache.org/jira/browse/TAVERNA-827
Project: Apache Taverna
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Stian Soiland-Reyes updated TAVERNA-812:
Description:
I think we are ready to release Taverna Maven Parent and Taverna
Stian Soiland-Reyes created TAVERNA-834:
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Summary: Update Jira following Taverna Language release
Key: TAVERNA-834
URL: https://issues.apache.org/jira/browse/TAVERNA-834
Project: Apache Taverna
Stian Soiland-Reyes created TAVERNA-870:
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Summary: Move Taverna website away from SVN and cms.apache.org?
Key: TAVERNA-870
URL: https://issues.apache.org/jira/browse/TAVERNA-870
Project: Apache
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Stian Soiland-Reyes commented on TAVERNA-870:
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Exampes of projects using
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Stian Soiland-Reyes updated TAVERNA-864:
Affects Version/s: language 0.15.0
Component/s: Taverna Language
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Stian Soiland-Reyes commented on TAVERNA-864:
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Fixed in
Stian Soiland-Reyes created TAVERNA-869:
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Summary: Require Java 8?
Key: TAVERNA-869
URL: https://issues.apache.org/jira/browse/TAVERNA-869
Project: Apache Taverna
Issue Type: Bug
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Stian Soiland-Reyes updated TAVERNA-864:
Fix Version/s: language 0.16.0
Correct Java META-INF/NOTICE files
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Stian Soiland-Reyes updated TAVERNA-869:
Fix Version/s: parent 2
Require Java 8?
---
Key:
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Stian Soiland-Reyes updated TAVERNA-828:
Assignee: Ian Dunlop (was: Stian Soiland-Reyes)
Release taverna-language to
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Stian Soiland-Reyes commented on TAVERNA-828:
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Should we rename the files
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Stian Soiland-Reyes updated TAVERNA-833:
Assignee: Ian Dunlop (was: Stian Soiland-Reyes)
Update git tags
---
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https://issues.apache.org/jira/browse/TAVERNA-832?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
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Stian Soiland-Reyes updated TAVERNA-832:
Assignee: Ian Dunlop (was: Stian Soiland-Reyes)
Document release process
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Stian Soiland-Reyes updated TAVERNA-847:
Fix Version/s: (was: parent 1)
Fix workflow mark as favorite
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Stian Soiland-Reyes commented on TAVERNA-834:
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Done - except for the Release
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Stian Soiland-Reyes updated TAVERNA-812:
Assignee: Ian Dunlop (was: Stian Soiland-Reyes)
Release Taverna Language
Stian Soiland-Reyes created TAVERNA-871:
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Summary: Race condition: occassional NullPointerException in
DispatchStackImpl
Key: TAVERNA-871
URL: https://issues.apache.org/jira/browse/TAVERNA-871
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Stian Soiland-Reyes commented on TAVERNA-871:
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When a job is waiting for a
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Stian Soiland-Reyes updated TAVERNA-871:
Attachment: control-0003x0005.t2flow
Attached test workflow from Javıer R.
Stian Soiland-Reyes created TAVERNA-843:
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Summary: Link to Apache's Jira on Taverna Website(s)
Key: TAVERNA-843
URL: https://issues.apache.org/jira/browse/TAVERNA-843
Project: Apache Taverna
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Stian Soiland-Reyes updated TAVERNA-846:
Fix Version/s: language 0.15.0
Typo and annotation missing:
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Stian Soiland-Reyes updated TAVERNA-846:
Component/s: Taverna Language
Typo and annotation missing:
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https://issues.apache.org/jira/browse/TAVERNA-842?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
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Stian Soiland-Reyes reassigned TAVERNA-842:
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Assignee: Stian Soiland-Reyes
RO library does not recognize the history
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Stian Soiland-Reyes updated TAVERNA-845:
Component/s: Taverna Language
Creators as imported from COMBINE archives
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Stian Soiland-Reyes updated TAVERNA-844:
Component/s: Taverna Language
Request for an RO validator
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Stian Soiland-Reyes updated TAVERNA-844:
Fix Version/s: (was: language 0.15.0)
Request for an RO validator
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Stian Soiland-Reyes updated TAVERNA-844:
Assignee: Menaka Madushanka (was: Stian Soiland-Reyes)
Request for an RO
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Stian Soiland-Reyes commented on TAVERNA-844:
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Assigned to Menaka, who agreed
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https://issues.apache.org/jira/browse/TAVERNA-875?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=15050478#comment-15050478
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Stian Soiland-Reyes commented on TAVERNA-875:
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Thanks for raising this. I've removed
Stian Soiland-Reyes created TAVERNA-878:
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Summary: Tool: Execute CWL Tool descriptions
Key: TAVERNA-878
URL: https://issues.apache.org/jira/browse/TAVERNA-878
Project: Apache Taverna
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Stian Soiland-Reyes updated TAVERNA-878:
Labels: cwl (was: )
> Tool: Execute CWL Tool descriptions
>
Stian Soiland-Reyes created TAVERNA-879:
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Summary: Docker command line tool for Taverna Activity
Key: TAVERNA-879
URL: https://issues.apache.org/jira/browse/TAVERNA-879
Project: Apache Taverna
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Stian Soiland-Reyes updated TAVERNA-887:
Fix Version/s: commandline 3.1.0
> Remove Bundle: logging
> --
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Stian Soiland-Reyes commented on TAVERNA-887:
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This is now only output if system property
Stian Soiland-Reyes created TAVERNA-972:
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Summary: Remove irrelevant/disabled command line options
Key: TAVERNA-972
URL: https://issues.apache.org/jira/browse/TAVERNA-972
Project: Apache Taverna
Stian Soiland-Reyes created TAVERNA-973:
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Summary: Support -inputbundle
Key: TAVERNA-973
URL: https://issues.apache.org/jira/browse/TAVERNA-973
Project: Apache Taverna
Issue Type: New
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https://issues.apache.org/jira/browse/TAVERNA-423?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
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Stian Soiland-Reyes updated TAVERNA-423:
Fix Version/s: engine 3.1.0
> Need workflow run progress report
>
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https://issues.apache.org/jira/browse/TAVERNA-799?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=15307034#comment-15307034
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Stian Soiland-Reyes commented on TAVERNA-799:
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Closing outdated task. (but where did the code
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Stian Soiland-Reyes edited comment on TAVERNA-886 at 5/31/16 12:39 AM:
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Stian Soiland-Reyes commented on TAVERNA-972:
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New shorter help output (still a bit verbose -
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Stian Soiland-Reyes updated TAVERNA-871:
Fix Version/s: (was: engine 3.1.0)
engine 3.2.0
> Race
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Stian Soiland-Reyes updated TAVERNA-290:
Component/s: (was: Taverna Common Activities)
Taverna Plugin
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Stian Soiland-Reyes commented on TAVERNA-423:
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This was implemented in Taverna 3 as workflow
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Stian Soiland-Reyes updated TAVERNA-254:
Fix Version/s: engine 3.1.0
> provenance depends on xml serialization
>
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Stian Soiland-Reyes commented on TAVERNA-254:
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The workaround is that the classic provenance
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Stian Soiland-Reyes commented on TAVERNA-886:
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I can't reproduce this exact error anymore,
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Stian Soiland-Reyes updated TAVERNA-886:
Summary: log4j is not always setup (was: log4j object "is not assignable")
>
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Stian Soiland-Reyes updated TAVERNA-589:
Issue Type: New Feature (was: Sub-task)
Parent: (was: TAVERNA-229)
>
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Stian Soiland-Reyes updated TAVERNA-589:
Summary: Server to use Taverna 3 platform APIs (was: Connected to the new
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Stian Soiland-Reyes commented on TAVERNA-589:
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The code is pretty much there - but it needs
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https://issues.apache.org/jira/browse/TAVERNA-208?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
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Stian Soiland-Reyes updated TAVERNA-208:
Component/s: (was: Taverna Common Activities)
Taverna
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https://issues.apache.org/jira/browse/TAVERNA-697?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
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Stian Soiland-Reyes updated TAVERNA-697:
Component/s: (was: Taverna Common Activities)
Taverna
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Stian Soiland-Reyes updated TAVERNA-208:
Labels: tool (was: localworker)
> Select file with no input freeze on Mac OS X
>
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Stian Soiland-Reyes updated TAVERNA-589:
Fix Version/s: server 3.1.0
> Connected to the new platform
>
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Stian Soiland-Reyes commented on TAVERNA-229:
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Closing as Taverna 2 server has been feature
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Stian Soiland-Reyes updated TAVERNA-886:
Summary: log4j is not always configured (was: log4j is not always setup)
> log4j
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Stian Soiland-Reyes updated TAVERNA-283:
Fix Version/s: command-line 3.1.0
> Taverna commandline distro missing JARs in
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Stian Soiland-Reyes commented on TAVERNA-283:
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No longer relevant as Taverna 3's plugin
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Stian Soiland-Reyes updated TAVERNA-973:
Fix Version/s: (was: command-line 3.1.0)
command-line 3.2.0
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https://issues.apache.org/jira/browse/TAVERNA-940?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
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Stian Soiland-Reyes updated TAVERNA-940:
Fix Version/s: (was: command-line 3.1.0)
command-line 3.2.0
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Stian Soiland-Reyes updated TAVERNA-975:
Fix Version/s: (was: engine 3.2.0)
engine 3.1.0
> archetype
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Stian Soiland-Reyes updated TAVERNA-973:
Fix Version/s: (was: command-line 3.2.0)
command-line 3.1.0
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Stian Soiland-Reyes updated TAVERNA-940:
Description:
.. as only -inputfile and -inputvalue seems to be supported.
Perhaps
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Stian Soiland-Reyes updated TAVERNA-940:
Fix Version/s: (was: command-line 3.2.0)
command-line 3.1.0
Stian Soiland-Reyes created TAVERNA-971:
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Summary: jarcache not working through OSGi
Key: TAVERNA-971
URL: https://issues.apache.org/jira/browse/TAVERNA-971
Project: Apache Taverna
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Stian Soiland-Reyes commented on TAVERNA-971:
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SSL error if cache is not used:
{code}
Can't
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Stian Soiland-Reyes updated TAVERNA-974:
Fix Version/s: command-line 3.2.0
> Add -inputjson option
> -
Stian Soiland-Reyes created TAVERNA-974:
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Summary: Add -inputjson option
Key: TAVERNA-974
URL: https://issues.apache.org/jira/browse/TAVERNA-974
Project: Apache Taverna
Issue Type: New
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Stian Soiland-Reyes commented on TAVERNA-973:
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-inputbundle added for commandline 3.1.0 RC2
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Stian Soiland-Reyes updated TAVERNA-975:
Description:
While building taverna-engine 3.1.0 RC1 with {{mvn clean install}},
Stian Soiland-Reyes created TAVERNA-975:
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Summary: archetype integration tests fail for fresh release
Key: TAVERNA-975
URL: https://issues.apache.org/jira/browse/TAVERNA-975
Project: Apache
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Stian Soiland-Reyes commented on TAVERNA-987:
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Clarification by Justin Mclean:
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https://issues.apache.org/jira/browse/TAVERNA-985?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=15339635#comment-15339635
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Stian Soiland-Reyes commented on TAVERNA-985:
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removed from META-INF/NOTICE and instead
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Stian Soiland-Reyes commented on TAVERNA-987:
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But is "Public Domain" valid outside US?
Stian Soiland-Reyes created TAVERNA-986:
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Summary: Remove W3C Software License from NOTICE
Key: TAVERNA-986
URL: https://issues.apache.org/jira/browse/TAVERNA-986
Project: Apache Taverna
Stian Soiland-Reyes created TAVERNA-881:
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Summary: Save Taverna workflows as CWL
Key: TAVERNA-881
URL: https://issues.apache.org/jira/browse/TAVERNA-881
Project: Apache Taverna
Issue
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Stian Soiland-Reyes commented on TAVERNA-874:
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Jenkins now happy as well, deploying newer
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https://issues.apache.org/jira/browse/TAVERNA-874?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=15092225#comment-15092225
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Stian Soiland-Reyes commented on TAVERNA-874:
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I updated the pom.xml of
Stian Soiland-Reyes created TAVERNA-882:
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Summary: Publications page
Key: TAVERNA-882
URL: https://issues.apache.org/jira/browse/TAVERNA-882
Project: Apache Taverna
Issue Type: New
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Stian Soiland-Reyes updated TAVERNA-883:
Labels: osgi (was: )
Component/s: Taverna Commandline
> Find valid OSGi
Stian Soiland-Reyes created TAVERNA-883:
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Summary: Find valid OSGi bundles for Woden
Key: TAVERNA-883
URL: https://issues.apache.org/jira/browse/TAVERNA-883
Project: Apache Taverna
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https://issues.apache.org/jira/browse/TAVERNA-882?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=15101906#comment-15101906
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Stian Soiland-Reyes commented on TAVERNA-882:
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Publications could have a "Cite" thing at the
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Stian Soiland-Reyes commented on TAVERNA-882:
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Great stuff! Agree on having two sections like
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Stian Soiland-Reyes commented on TAVERNA-882:
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Earlier (--2012) publications/references.
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Stian Soiland-Reyes commented on TAVERNA-882:
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Adapted from our
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Stian Soiland-Reyes edited comment on TAVERNA-882 at 1/15/16 3:21 PM:
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Stian Soiland-Reyes commented on TAVERNA-882:
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I've changed my mind now considering the
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Stian Soiland-Reyes edited comment on TAVERNA-883 at 1/15/16 3:59 PM:
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