Re: [easybuild] Contributing to documentation?

2020-04-17 Thread Mike Kelsey
Kenneth Hoste writes: > We certainly welcome contributions to the documentation! > > It's housed in the 'docs' subdirectory of the 'easybuild' repository at > https://github.com/easybuilders/easybuild. > > Updated to the docs can be made via pull requests, see >

Re: [easybuild] Build FSL fail

2020-04-17 Thread Sam Moors
Hi Yann, In your log file the software depending on MPI are in the directory /opt/ebsofts/MPI/GCC-CUDA whereas your EBROOTBOOST points to /opt/ebsofts/MPI/GCC Could this be the source of your problem? Sam On Fri, Apr 17, 2020 at 11:54 AM Yann Sagon wrote: > Hello, > Le 17.04.2020 à

Re: [easybuild] Build FSL fail

2020-04-17 Thread Yann Sagon
Hello, Le 17.04.2020 à 10:26, Kenneth Hoste a écrit : This looks like a Boost module that was not installed with EasyBuild, or was it? Does it define the $EBROOTBOOST environment variable? If not, that explains why "get_software_root" is failing for Boost... ml show Boost

Re: [easybuild] V8-2.2-foss-2018b-R-3.5.1.eb fails to load Java/1.8

2020-04-17 Thread Kenneth Hoste
Hi Loris, On 17/04/2020 11:01, Loris Bennett wrote: Hi Kenneth, Kenneth Hoste writes: Hi Loris, I can't see anything that could explain the problem you're seeing, so I'm intrigued to figure out what's going on... Any chance you can share a debug log for this issue (collected with "eb

Re: [easybuild] Build FSL fail

2020-04-17 Thread Kenneth Hoste
Hi Yann, On 16/04/2020 14:10, Yann Sagon wrote: Dear list, I was happy since a user sees FSL on eb is missing imcp:) The version we had installed on our cluster is quite old, so I took the opportunity to update it, with a version with CUDA support. Yes is see it's still not provided with

Re: [easybuild] V8-2.2-foss-2018b-R-3.5.1.eb fails to load Java/1.8

2020-04-17 Thread Kenneth Hoste
Hi Loris, I can't see anything that could explain the problem you're seeing, so I'm intrigued to figure out what's going on... Any chance you can share a debug log for this issue (collected with "eb --debug")? Feel free to send it to me off-list if you feel you need to, I'll just extract

Re: [easybuild] Contributing to documentation?

2020-04-17 Thread Kenneth Hoste
Hi Mike, On 17/04/2020 05:01, Mike Kelsey wrote: Hello, all! Since starting to deal seriously with EasyBuild, I've posted several issues and pull requests which involve the documentation. In my own experiment, I'm not shy about asking my collaborators to update our Confluence documentation,

Re: [easybuild] Accessing the 'git_config' dictionary in my EasyBlock?

2020-04-17 Thread Kenneth Hoste
On 16/04/2020 16:22, Mike Kelsey wrote: Kenneth Hoste writes: The git_config mechanism is not really intended to be accessed directly from easyblocks, but I see no problem in doing so (it's a stable feature, and the API from the point of view of an easyblock won't be changed imho). In the