Re: [easybuild] Build MRtrix depends on OS liblzma

2019-06-03 Thread Yann Sagon
Hello, are you talking about this log file? https://gist.github.com/ysagon/1823752abf05ae675cf5cd17ca3e74cd This is the log once the build is finished. Best On Fri, May 24, 2019 at 8:01 PM Kenneth Hoste wrote: > Hi Yann, > > Can you share the full (preferably debug) EasyBuild log thay shows

Re: [easybuild] Build MRtrix depends on OS liblzma

2019-05-24 Thread Kenneth Hoste
Hi Yann, Can you share the full (preferably debug) EasyBuild log thay shows the issue? Maybe the MRtrix build scripts hardcode system locations somewhere? regards, Kenneth On 24/05/2019 15:39, Alan O'Cais wrote: Have you checked the configure output? Does  PKG_CONFIG_PATH  appear in your

Re: [easybuild] Build MRtrix depends on OS liblzma

2019-05-24 Thread Alan O'Cais
Sorry...that was my best guess. Maybe http://qt.shoutwiki.com/wiki/Using_pkg-config_with_qmake (but seems like too much effort) On Fri, 24 May 2019 at 16:16, Yann Sagon mailto:yann.sa...@unige.ch>> wrote: On Fri, May 24, 2019 at 3:40 PM Alan O'Cais mailto:a.oc...@fz-juelich.de>> wrote: Have

Re: [easybuild] Build MRtrix depends on OS liblzma

2019-05-24 Thread Yann Sagon
On Fri, May 24, 2019 at 3:40 PM Alan O'Cais wrote: > Have you checked the configure output? > It seems MRtrix isn't using a configure step? https://github.com/easybuilders/easybuild-easyblocks/blob/master/easybuild/easyblocks/m/mrtrix.py > Does PKG_CONFIG_PATH appear in your XZ module

Re: [easybuild] Build MRtrix depends on OS liblzma

2019-05-24 Thread Alan O'Cais
Have you checked the configure output? Does PKG_CONFIG_PATH appear in your XZ module file? If so then it should be able to find it in PKG_CONFIG_PATH at configure time. If either of those is not the case then you probably need Autotools as a builddep of your XZ/MRtrix easyconfigs? On Fri,

[easybuild] Build MRtrix depends on OS liblzma

2019-05-24 Thread Yann Sagon
Dear list, I'm trying to build MRtrix-3.0_RC3 for foss/2018b on CentOS6 and the issue is that it depend on libzma, even if XZ is included as dependency in the eb file. ldd $(which mrinfo) | grep zma liblzma.so.0 => /usr/lib64/liblzma.so.0 (0x2aea556e7000) Here is the eb file I'm