rnce to any git command,
only few refernces to "name: github_account, config: None".
Anyone faced similar issue? How may I debug this problem?
TIA,
Arnau
og, this is handled entirely by GitPython.
any way to debug the GitPython process?
Thanks,
Arnau
2016-10-04 13:28 GMT+02:00 Kenneth Hoste :
> Hi Arnau,
>
> On 04/10/16 12:25, Arnau wrote:
>
>> Hi,
>>
>> while running EB 2.8.2 on SL6.7 we had some Git Repository config
ll look into EB code to try to understand what the problem is.
Thanks!
Arnau
2016-10-04 14:20 GMT+02:00 Kenneth Hoste :
> Hi Arnau,
>
> Can you share the full debug log of an installation?
>
> If something went wrong when copying to the git repo, you should see a
> couple of (n
;]\n"
< else:
< # statstemplate = "\nbuildstats.append(%s)\n"
< statsprefix = "\nbuildstats.append("
< statssuffix = ")\n"
<
---
> statsprefix = prefix
> statssuffix = "]\n"
>
, Is there any
way to install a Tcl package with EasyBuild? If not, how do you manage tcl
extensions?
[1] https://wiki.tcl.tk/13735
--
Best,
Arnau
Hi,
well, seems that I only have to uncompress the tcl package in a specific
Tcl location. Nothing that can't be done with EB.
Sorry for the noise.
Arnau
2018-01-12 13:10 GMT+01:00 Arnau :
> Hi all,
>
> I'm trying to compile a R package and it requires a tcl package
> (
Hi Raj,
did you submit the PR?
Best,
Arnau
2018-01-05 17:01 GMT+01:00 Raj Ayyampalayam :
> Yes, I got it working using the enable-fat flag. I will submit a PR in a
> little bit.
>
> -Raj
>
> On Fri, Jan 5, 2018 at 7:37 AM Markus Geimer
> wrote:
>
>> Raj,
&g
scribed in
https://lists.ugent.be/wws/arc/easybuild/2017-05/msg00081.html)
Best,
Arnau
d copy the binaries from there:
ar p $DEB data.tar.gz | tar xvz --strip-components 2 -C $DESTI
I'm trying to translate teh above installation command into easyconfig (as
an exercise), but I don't find a way I tried several options without
luck.
anyone could give me some hint?
TIA,
Arnau
Thanks a lot Alan!!
that did work:
sources = [{
> 'filename': 'pandoc-1.19.2-1-amd64.deb',
> 'extract_cmd': 'ar p %s data.tar.gz | tar xvz --strip-components 3 ',
> }]
Best,
Arnau
2018-04-05 15:45 GMT+02:00 Alan O'Cais :
> Hi Arn
ns.
So I'd like to ask you for experience and recommendations for does kind of
installations. (I'm quite new to go installations). Or even if someone
already created some kind of GO easyblock.
TIA,
Arnau
roach :-)
I'll let you know if the exmaple you provided works.
thanks for your help,
Arnau
El mar., 24 jul. 2018 a las 15:39, Alan O'Cais ()
escribió:
> Hi Arnau,
>
> I've no experience with Go installations either so maybe someone else add
> some pointers. I
"cd %(installdir)s/src/
github.com/awslabs/%(name)s/ecr-login/cli/docker-credential-ecr-login/ && "
install_cmd += "go build && go install "
Thanks a lot,
Arnau
El mié., 25 jul. 2018 a las 9:29, Arnau () escribió:
> Hi Alan,
>
> thanks for your answer.
1.8.1 . Maybe that explains why.
Thanks a lot for your help.
BTW, do you know if anyone is working in the go easyblock thing? or if is
it in the EB roadmap? (I don't think we're going to install too much go
stuff, but just in case. ...)
Best,
Arnau
El mié., 25 jul. 2018 a las 1
e meanwhile maybe you would open an issue in the
> easyblock repo to track this, and paste in the working easyconfig there.
>
> Alan
>
> On Wed, 25 Jul 2018 at 14:21, Arnau wrote:
>
>> 1.8.1 . Maybe that explains why.
>>
>> Thanks a lot for your help.
>>
&
cfg['configopts'] += "-DPYTHON_LIBRARY=%s/lib/libpython%s.%s " %
(root_python, shortpyver, shlib_ext)
the library name is libpython3.6m.so and not libpython3.6.so).
TIA,
Arnau
El mié., 25 jul. 2018 a las 15:53, Jure Pečar ()
escribió:
>
> Hi all,
>
> I'm tr
know how to put
this in my easyconfig. The sources cannot be found.
Any help, please?
Best,
Arnau
Sorry for the noise.
Something like
https://github.com/LabAdvComp/parcel/archive/8cf5fe9922f3f3f1f9930c47783fc18c512d6b6a.tar.gz
works I had a typo and that's why it did not work.
Best,
Arnau
El vie., 8 feb. 2019 a las 11:17, Arnau () escribió:
> Hi all,
>
> I'd lik
Thanks Alan,
yes, that was trivial, my fault... you know, when you run the same command
over and over and you don't realize that you have a typo in the URL
Thanks,
Arnau
El vie., 8 feb. 2019 a las 14:14, Alan O'Cais ()
escribió:
> There are some examples in the repo for ho
h installations.
(I managed to install the software using EB_Java with an ugly install_cmd
line).
TIA,
Arnau
; collect2: error: ld returned 1 exit status
> It seems like you don't have glibc-static installed on your system?
But in my case glibc-static IS installed.
I'm getting a little crazy trying to understand the problem, so I come here
to ask for help...
Anyone?
TIA,
Arnau
now how to continue now.
Best,
Arnau
El jue., 18 jul. 2019 a las 14:43, Jakob Schiøtz ()
escribió:
>
>
> > On 18 Jul 2019, at 12:13, Arnau wrote:
> >
> >
> /apps/prod/easybuild/sl7.x86_64/software/binutils/2.28-GCCcore-6.4.0/bin/ld.gold:
> error:
> > cannot
Hi Niek,
would you mind sharing your easyconfig file for Bridger? :-)
TIA,
Arnau
2015-09-24 11:20 GMT+02:00 Niek de Klein :
> That works, thanks!
>
> On Thu, Sep 24, 2015 at 11:11 AM, Jens Timmerman
> wrote:
>
>> Hi Niek,
>>
>> SOURCELOWER_TAR_BZ2 results in
Thanks!
2015-10-07 10:49 GMT+02:00 Niek de Klein :
> Hi Arnau,
>
> Here is the easyconfig file I have but it is not working yet because it
> makes Boost instead of using the already installed one.
>
> Cheers,
> Niek
>
>
> easyblock = 'ConfigureMake'
>
e/automake.html
> <http://www.gnu.org/software/automake/automake.html>*
TIA,
Arnau
Thanks a lot!
El jue., 14 may. 2020 a las 8:13, Markus Geimer ()
escribió:
> Arnau,
>
> On 5/13/20 4:45 PM, Arnau wrote:
> > What information from the easyconfig can/will be added to the "More
> > information" part of the generated module file?
>
> This sect
ins like 2017b)
LACPAK from OpenBLAS is found:
External libraries: readline, BLAS(OpenBLAS), *LAPACK(in blas)*,
> curl
Anyone could give a hand on this one?
TIA,
Arnau
'm wondering if I'm doing something
wrong in the easyconfig so I'm telling EB to install the software twice.
Or is it something somehow expected?
Anyone could give a hand? I've been looking into my easyconfigs and can't
find the reason for this thing.
TIA,
Arnau
Thanks a lot Davide.
Best,
Arnau
El jue, 10 jun 2021 a las 17:38, Davide Vanzo ()
escribió:
> Arnau,
>
>
>
> That is totally fine.
>
> The easyconfig files without a toolchain in the file name are built with a
> system toolchain (i.e. the compiler provided by your O
path
and the giturl ...
I've read the release notes for 4.5 and did not find any reference to a
modification on this parameter, so I'm wondering if I'm missing something
or it's just new bug.
Anyone on 4.5 successfully using the git feature?
TIA,
Arnau
Ah! thanks Pablo did not check the issues in github before asking :-(
El mar, 9 nov 2021 a las 12:47, Pablo Escobar Lopez (<
pablo.escobarlo...@unibas.ch>) escribió:
> Hi Arnau,
>
> We had the same problem. Check this issue in github:
> https://github.com/easybuilders/e
/easybuilders/easybuild/issues/398>
What do you usually use for python package installation? what is your rule
(or the easyconfig rule) if any?
TIA,
Arnau
I find this a bit weird as, as said a the beginning, my understanding of
the bundle is: "a list of python packages installed in a way that each
knows about the others (and that's why order matters)."
Am I wrong with my understanding on how the pythonbundle works?
(I have other questions, but I guess that all depeden on this one :-) )
TIA,
Arnau
Thanks Kenneth.
El lun, 20 dic 2021 a las 8:53, Kenneth Hoste ()
escribió:
> Just to be clear: this regression was fixed in EasyBuild v4.5.1, see
> https://github.com/easybuilders/easybuild-framework/pull/3899 for more
> details.
>
>
> regards,
>
> Kenneth
>
> On
Hi,
anyone?
El vie, 3 dic 2021 a las 9:41, Arnau () escribió:
> Hi all,
>
> I was installing MACS3 using PythonBundle.My understanding is that a
> bundle is just a list of packages on some order so they all know about each
> other.
>
> MACS3 needs 3 packages to be ins
Hi,
anyone?
El vie, 3 dic 2021 a las 9:27, Arnau () escribió:
> Hi all,
>
> I've a generic question on how to install Python packages.It's related to
> this: Docs needed on when to use the Python EasyConfig, Bundle, or
> PythonPackage to install Python packages (sim
Thanks for your answer, Alan.
I imagine there's no single way/approach, I was more like asking for your
experience. your answer is what I was looking for ;-)
Best,
El lun, 10 ene 2022 a las 15:51, Alan O'Cais ()
escribió:
> Hi Arnau,
>
> I think there is no rule for th
Hi,
unless there's a need to update its dependecies, too, you could try
"--try-software-version=1.2.2" option?
HTH,
El lun, 17 ene 2022 a las 12:00, escribió:
> Dear,
>
> Would it be possible to update the version of the BAGEL programme in
> easybuild? According to the documentation, the curre
Dear all,
I'm again struggling with Python package installation. I need a bit of
advice/orientation on how to do it
I'm writing a new easyconfig for jupyterhub 2.1.1. I started creating a
virtualenv to get all the jupyterhub's dependencies. I ended up with a list
of 104 packages (not using ot
las 15:53, Arnau () escribió:
> Dear all,
>
> I'm again struggling with Python package installation. I need a bit of
> advice/orientation on how to do it
>
> I'm writing a new easyconfig for jupyterhub 2.1.1. I started creating a
> virtualenv to get all the jupyter
now the installation works
El vie, 4 feb 2022 a las 16:43, Alan O'Cais ()
escribió:
> If you want to get intimidated by JupyterHub take a look at
> https://github.com/easybuilders/JSC/blob/2020/Golden_Repo/j/Jupyter/Jupyter-2021.3.2-gcccoremkl-10.3.0-2021.2.0-Python-3.8.5.eb
>
Dear all,
I'd like to install a bunch of python packages from a requirements.txt
instead of listing each of them as extension. So I'd like to use the
use_pip_requirement option.
According to the doc :
install using ‘python -m pip install –requirement’. The sources is expected
to be the requireme
toolchainopts = {'pic': True}
builddependencies = [
('UnZip', '6.0'),
]
dependencies = [
('Python', '3.11.1', '-bare'),
]
use_pip= True
sanity_pip_check= False
runtest= False
sources=['requirements.txt']
use_pip_requirement= True
unpack_sources = False
use_pip_for_deps = True
TIA,
Arnau
t with me?
TIA,
Arnau
tand which ones need to be fixed before using them
in the new OS.
TIA,
Arnau
24 a las 12:01, Alan O'Cais ()
escribió:
> If you are using Lmod, see
> https://lmod.readthedocs.io/en/latest/300_tracking_module_usage.html
>
> On 03-Apr-24 11:29 AM, Arnau wrote:
> > Hi all,
> >
> > I'd like to know if there's a tool to track modules usa
Hi all,
my name is Arnau Bria and I'm a sysadmin at CRG (Barcelona).
I'm really interested in EB as seems a good option for providing new
software to our users in a easy way.
I start reading your intro (http://hpcugent.github.io/easybuild/) some
docs from your wiki (https://github.co
On Tue, 1 Jul 2014 11:10:28 +0200
Pablo Escobar wrote:
> Hi Arnau :)
Hi Pablo!! :-)
> I think the dependencies are not being resolved because maybe you are
> not using --robot option? Just try the same command line just adding
> --robot or -r and let us know if it works.
Tried with
On Tue, 01 Jul 2014 12:24:04 +0200
Kenneth Hoste wrote:
> Hi Arnau,
Hi Kenneth,
> Welcome to the wonderful world of EasyBuild! :-)
Thanks!
> > I think the dependencies are not being resolved because maybe you
> > are not using --robot option? Just try the same command li
On Wed, 02 Jul 2014 14:00:55 +0200
Jens Timmerman wrote:
> Hi Arnau,
Hi Jens,
[...]
> > so, If I have successfully installed gcc + openmpi gompi should be a
> > valid toolchain...am I right?
> you will still need to create a modulefile for the gompi toolchain,
> this is do
On Wed, 2 Jul 2014 14:17:22 +0200
Pablo Escobar Lopez wrote:
> Hi Arnau
Hi Pablo,
> there is one tip I forgot to tell you in my previous email.
>
> By default easybuild doesn't enable support for any queuing system in
> OpenMPI. I know at CRG you use SGE so I would recomme
ild is doing behind the scenes, but to
> get started quickly you can just use the --robot function.
Great!!
> Regards,
Cheers,
Arnau
'goolf', 'version': '1.4.10'}
toolchainopts = {'optarch': True, 'pic': True}
sources = [SOURCELOWER_TAR_GZ]
source_urls = ['http://tophat.cbcb.umd.edu/downloads/']
but this source_url does not exist
how may I report this error? here is enough? better report a bug?
Bests,
Arnau
erwrite my existing installation?
wget --no-check-certificate
https://raw.github.com/hpcugent/easybuild-framework/develop/easybuild/scripts/bootstrap_eb.py
export EASYBUILD_PREFIX=/software/as/el6.3/EasyBuild/
python bootstrap_eb.py $EASYBUILD_PREFIX
TIA,
Arnau
On Tue, 22 Jul 2014 15:19:24 +0200
Txema Heredia wrote:
> Hi Arnau,
Hi Txema,
> have you visited http://tophat.cbcb.umd.edu/downloads/ ? The site no
> longer exists.
>
> If you visit http://tophat.cbcb.umd.edu you will be redirected to
> http://ccb.jhu.edu/software/tophat/
nks Iñigo!
I was looking for that link!!
> Iñigo
Cheers,
Arnau
On Tue, 22 Jul 2014 15:54:49 +0200
Pablo Escobar Lopez wrote:
> Hi Arnau
Hi Pablo,
> If you already have EasyBuild working I think the easier aproach is
> to use easybuild itself to install it. Kenneth always attach a
> easyconfig file with the release announce email so you would on
t I read his answer after yours, when I
already upgraded EB :-)
> regards,
> Pablo.
Thanks!
Arnau
u are right! I said so but I did not fix/report it. Sorry.
> regards,
> Kenneth
Cheers,
Arnau
59 matches
Mail list logo
