[Fink-users] Can't resolve dependency "liboctave343-gcc47-dev" for package "fits-oct343-1.0.2-1"

2012-07-31 Thread Dominique Dhumieres
Updating to fits-oct343-1.0.2-1 on both ppc 10.5 and intel 10.6 failed with Can't resolve dependency "liboctave343-gcc47-dev" for package "fits-oct343-1.0.2-1" (no matching packages/versions found) Exiting with failure. TIA Dominique -

[Fink-users] Failed: phase compiling: fits-oct360-1.0.2-1 failed

2012-07-31 Thread Dominique Dhumieres
Updating to fits-oct360-1.0.2-1 failed on Package manager version: 0.34.1 Distribution version: selfupdate-rsync Tue Jul 31 21:36:08 2012, 10.5, powerpc Trees: local/main stable/main stable/crypto unstable/main unstable/crypto Xcode.app: 3.1.4 Xcode command-line tools: 3.1.4 fits-oct360-1.0.2-1 i

Re: [Fink-users] Failed: phase compiling: imlib-1.9.15-1027 failed

2012-07-31 Thread Dominique Dhumieres
> I'd recommend renaming /usr/X11/bin/xmkmf to get cleaner X11 setup, > since any Fink packages that need xmkmf use fink's xmkmf package. It worked, thanks for the tip. Dominique -- Live Security Virtual Conference Exclu

[Fink-users] Failed: phase compiling: imlib-1.9.15-1027 failed

2012-07-29 Thread Dominique Dhumieres
Updating to imlib-1.9.15-1027 failed on Package manager version: 0.34.1 Distribution version: selfupdate-rsync Sun Jul 29 16:15:22 2012, 10.5, powerpc Trees: local/main stable/main stable/crypto unstable/main unstable/crypto Xcode.app: 3.1.4 Xcode command-line tools: 3.1.4 Max. Fink build jobs: 1

Re: [Fink-users] Infinite loop while configuring kst-1.7.0-1004

2012-07-25 Thread Dominique Dhumieres
> Do you have "coreutils-default" installed? I have coreutils installed, but not coreutils-default. > ... > Do you have fink's "make" package installed? I had it. Removing it did not fixed the problem. Dominique -- Li

Re: [Fink-users] Infinite loop while configuring kst-1.7.0-1004

2012-07-25 Thread Dominique Dhumieres
I get the same loop with ppc 10.5, the time stamp is make: Warning: File `Makefile.am' has modification time 1.8e+19 s in the future Dominique -- Live Security Virtual Conference Exclusive live event will cover all the w

[Fink-users] Infinite loop while configuring kst-1.7.0-1004

2012-07-24 Thread Dominique Dhumieres
Updating kst-1.7.0-1004 on intel 10.6.8 fails with an infinite loop while configuring: ... make[1]: Leaving directory `/sw64/src/fink.build/kst-1.7.0-1004/kst-1.7.0' /bin/sh ./config.status --recheck running CONFIG_SHELL=/bin/sh /bin/sh ./configure --prefix=/sw64 --mandir=/sw64/share/man --with-d

Re: [Fink-users] Another batch of octave glitches

2012-07-08 Thread Dominique Dhumieres
Hi Alex, > > (3) On ppc 10.5 updating to octave-atlas-3.6.0-8 fails with ... > > Thanks for the report. They're fixed now in CVS. This is fixed for 3.6.2, but not for 3.6.0 nor 3.6.1. TIA Dominique -- Live Security Vi

Re: [Fink-users] Failed: phase compiling: qrupdate-atlas-1.1.2-4 failed

2012-07-08 Thread Dominique Dhumieres
Alex, > I'm not supporting 10.4, ... I know. It was FYI. Dominique -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers

[Fink-users] Failed: phase compiling: qrupdate-atlas-1.1.2-4 failed

2012-07-08 Thread Dominique Dhumieres
Updating to qrupdate-atlas-1.1.2-4 on Package manager version: 0.30.2 Distribution version: selfupdate-rsync Sun Jul 8 16:18:10 2012, 10.4, powerpc Trees: local/main stable/main stable/crypto unstable/main unstable/crypto Xcode Version: 2.5-1 failed with ... gfortran-fsf-4.7 -fimplicit-none -O3

[Fink-users] Another batch of octave glitches

2012-07-05 Thread Dominique Dhumieres
Hi Alex, I have been hit by the following glitches: (1) /sw*/fink/10.4/stable/main/finkinfo/sci/octgpr-oct.info ask for gcc (4.7), but does not find the right dependency. Replacing 4.7 with 4.6 fixes it. (2) There is an extra "fi" in /sw*/fink/10.4/stable/main/finkinfo/sci/linear-algebra-oct343

Re: [Fink-users] Failed: phase compiling: cpan-meta-yaml-pm-0.008-1 failed

2012-06-23 Thread Dominique Dhumieres
Hi David, I have finally solved the proble the "old way" (aka brute force): (1) I have removed all the installed packages pm586 and dependencies, (2) I have removed all the *pm586* entries in /sw/fink/debs/ (3) I have removed all the *.deb pointed by the symlinks. >From this "ground state" I have

[Fink-users] Failed: PatchFile "/sw/fink/dists/stable/main/finkinfo/10.4-EOL/sci/matplotlib-py.patch" checksum does not match!

2012-06-21 Thread Dominique Dhumieres
David, Another glitch with 10.4-EOL: Failed: PatchFile "/sw/fink/dists/stable/main/finkinfo/10.4-EOL/sci/matplotlib-py.patch" checksum does not match! Actual: dbd6b6fe0e8bf4ad2115c73d05157783 Expected: 758179e681590f68d65f36344a5e268f TIA Dominique ---

Re: [Fink-users] Failed: phase compiling: ffmpeg-0.7.13-1 failed

2012-06-21 Thread Dominique Dhumieres
> Could you try again with those lines of the CompileScript removed, ... Actually I have moved /usr/bin/gcc-4.2 away and the build has completed. Dominique -- Live Security Virtual Conference Exclusive live event will co

Re: [Fink-users] Failed: phase compiling: ffmpeg-0.7.13-1 failed

2012-06-21 Thread Dominique Dhumieres
> How did you get gcc-4.2 on darwin8? I validated using gcc (4.0.1/apple). The default gcc on this box is 4.0.1, but I have 4.2.1 in /usr/bin/ so it is picked by # Prefer compilation with gcc-4.2 if available if [ -x /usr/bin/gcc-4.2 ]; then ../configure %c --cc=gcc-4.2 else

[Fink-users] Failed: phase compiling: ffmpeg-0.7.13-1 failed

2012-06-21 Thread Dominique Dhumieres
Updating to libavutil50-shlibs-0.7.13-1 on Package manager version: 0.30.2 Distribution version: selfupdate-rsync Thu Jun 21 08:55:06 2012, 10.4, powerpc Trees: local/main stable/main stable/crypto unstable/main unstable/crypto Xcode Version: 2.5-1 failed with ... sed 's/$MAJOR/50/' /sw/src/fin

[Fink-users] Failed: phase compiling: fftw3-3.3.2-8 failed

2012-06-21 Thread Dominique Dhumieres
Updating to fftw3-3.3.2-8 on Package manager version: 0.33.2 Distribution version: selfupdate-rsync Thu Jun 21 15:09:30 2012, 10.5, powerpc Trees: local/main stable/main stable/crypto unstable/main unstable/crypto Xcode.app: 3.1.4 Xcode command-line tools: 3.1.4 Max. Fink build jobs: 1 failed wi

[Fink-users] Some more glithches with octave305

2012-06-18 Thread Dominique Dhumieres
On ppc 10.5 updating odepkg-atlas-oct305 to 0.6.4-5 fails with Failed: Illegal version specification '3.9.11-13' for package atlas-shlibs On this platform and on x86_64 10.6 installing bundle-octave305* fails with Can't resolve dependency "liboctave305-gcc47-dev" for package "arpack-atlas-oct305

[Fink-users] Failed: phase compiling: octave-atlas-3.0.5-3015 failed

2012-06-11 Thread Dominique Dhumieres
Updating to octave-atlas-3.0.5-3015 on Package manager version: 0.32.6 Distribution version: selfupdate-rsync Sun Jun 10 18:44:20 2012, 10.5, powerpc Trees: local/main stable/main stable/crypto unstable/main unstable/crypto Xcode: 3.1.4 Max. Fink build jobs: 1 failed with /sw/bin/tar --no-same

[Fink-users] Failed: phase compiling: geometry-oct343-1.5.0-1 failed

2012-06-11 Thread Dominique Dhumieres
Updating to geometry-oct343-1.5.0-1 on Package manager version: 0.32.6 Distribution version: selfupdate-rsync Sun Jun 10 16:13:19 2012, 10.6, x86_64 Trees: local/main stable/main stable/crypto unstable/main unstable/crypto Xcode: 3.2.6 Max. Fink build jobs: 2 fials with /sw64/bin/tar --no-same

[Fink-users] Failed: phase compiling: arpack-ng-atlas-3.1.1-2 failed

2012-05-23 Thread Dominique Dhumieres
On both ppc OSX 10.5 and intel 10.6 updating to arpack-ng-atlas-3.1.1-2 failed ... checking for cheev_... yes configure: error: Cannot find LAPACK libraries ### execution of /tmp/fink.yQR5w failed, exit code 1 Removing runtime build-lock... Removing build-lock package... /sw64/bin/dpkg-lockwait -r

Re: [Fink-users] Some remaining problems with *-oct36*

2012-05-03 Thread Dominique Dhumieres
> This is now fixed in CVS. ... Confirmed on both counts. Thanks. Dominique -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT m

[Fink-users] Failed: phase compiling: octave-atlas-3.6.0-4 failed

2012-05-03 Thread Dominique Dhumieres
Updating to octave-atlas-3.6.0-4 failed on Package manager version: 0.32.6 Distribution version: selfupdate-rsync Thu May 3 08:35:10 2012, 10.5, powerpc Trees: local/main stable/main stable/crypto unstable/main unstable/crypto Xcode: 3.1.4 Max. Fink build jobs: with ... libtool: link: (cd .li

[Fink-users] Some remaining problems with *-oct36*

2012-05-03 Thread Dominique Dhumieres
I see the following failures: Can't resolve dependency "liboctave361-gcc46-dev" for package "signal-oct361-1.1.2-4" (no matching packages/versions found) Exiting with failure. and /sw64/bin/tar --no-same-owner --no-same-permissions -xf /sw64/src/odepkg-0.8.2.tar.gz [ -r /sw64/fink/dists/stable

Re: [Fink-users] Failed: phase compiling: cpan-meta-yaml-pm-0.008-1 failed

2012-04-15 Thread Dominique Dhumieres
David, > For comparison, I have (powerpc-darwin8): ... I have tried to rebuild extutils-makemaker-pm586 and it failed with ARCHFLAGS="" /usr/bin/perl5.8.6 Makefile.PL PERL="/usr/bin/perl5.8.6" PREFIX=/sw INSTALLPRIVLIB=/sw/lib/perl5/5.8.6 INSTALLARCHLIB=/sw/lib/perl5/5.8.6/darwin-thread-multi-

Re: [Fink-users] Failed: phase compiling: xemacs-21.4.22-1 failed

2012-04-13 Thread Dominique Dhumieres
> You need to look into the config.log file and find out what's causing gcc to > fail... > > I can see that "-Wl,-no_pie" is not understood. ... This is what I have done and where I have found that "-Wl,-no_pie" was breaking the configure on ppc. Dominique -

[Fink-users] Failed: phase compiling: xemacs-21.4.22-1 failed

2012-04-13 Thread Dominique Dhumieres
Updating to xemacs-21.4.22-1 failed on Package manager version: 0.32.5.5 Distribution version: selfupdate-rsync Fri Apr 13 10:54:26 2012, 10.5, powerpc Trees: local/main stable/main stable/crypto unstable/main unstable/crypto Xcode: 3.1.4 Max. Fink build jobs: with /sw/bin/tar --no-same-owner

Re: [Fink-users] Failed: phase compiling: cpan-meta-yaml-pm-0.008-1 failed

2012-04-10 Thread Dominique Dhumieres
> Can you also print for me? > fink list -t extutils-makemaker i extutils-makemaker-pm 6.56-5 Perl module to create a module Makefile extutils-makemaker-pm5100 6.62-1 Perl module to create a module Makefile extutils-makemaker-pm5100-bin [virtual package]

Re: [Fink-users] Failed: phase compiling: cpan-meta-yaml-pm-0.008-1 failed

2012-04-09 Thread Dominique Dhumieres
> Can you update cpan-meta-pm586 first, and then see if > cpan-meta-yaml-pm builds right? If that works, I might need a versioned > depend. Thanks. Unfortunately this does not work (it was the first thing I have tried): The following package will be installed or updated: cpan-meta-pm5

Re: [Fink-users] Failed: phase compiling: cpan-meta-yaml-pm-0.008-1 failed

2012-04-09 Thread Dominique Dhumieres
> Can you print for me: > > fink list -t cpan [pbook] /Users/dominiq% fink list -t cpan Information about 12561 packages read in 17 seconds. annocpan-perldoc-pm586 0.10-3 Integrate AnnoCPAN notes locally into perldoc annocpan-perldoc-pm588 0.10-3 Integrate AnnoCPAN notes local

[Fink-users] Failed: phase compiling: cpan-meta-yaml-pm-0.008-1 failed

2012-04-09 Thread Dominique Dhumieres
Updating to cpan-meta-yaml-pm-0.008-1 failed on Package manager version: 0.30.2 Distribution version: selfupdate-rsync Mon Apr 9 17:57:27 2012, 10.4, powerpc Trees: local/main stable/main stable/crypto unstable/main unstable/crypto Xcode Version: 2.5-1 with The following package will be install

[Fink-users] Can't resolve dependency "dbus1.3" for package "kdelibs4-mac-4.4.1-3" ...

2012-04-04 Thread Dominique Dhumieres
Trying to update to kdelibs4-mac-4.4.1-3 failed with Can't resolve dependency "dbus1.3" for package "kdelibs4-mac-4.4.1-3" (no matching packages/versions found) Exiting with failure. My dbus list is i dbus 1.4.18-1 Message bus system for applications

[Fink-users] Failed: Cannot read PatchFile "/sw64/fink/dists/stable/main/finkinfo/sci/odepkg-oct.patch"

2012-04-02 Thread Dominique Dhumieres
Hi Alex, Updating/installing odepkg-atlas-oct* failed with: Failed: Cannot read PatchFile "/sw64/fink/dists/stable/main/finkinfo/sci/odepkg-oct.patch" I think two patches are missing. TIA Dominique -- Better than sec?

Re: [Fink-users] Failed: phase installing: cantor4-mac-4.4.1-4 failed

2012-04-02 Thread Dominique Dhumieres
> A new revision with this fix should be available shortly via "fink > selfupdate". Now working! Thanks, Dominique -- Better than sec? Nothing is better than sec when it comes to monitoring Big Data applications. Try Bou

[Fink-users] Failed: phase installing: cantor4-mac-4.4.1-4 failed

2012-03-31 Thread Dominique Dhumieres
Updating to kdeedu4-mac-4.4.1-4 failed on Package manager version: 0.32.4.1 Distribution version: selfupdate-rsync Sat Mar 31 11:32:10 2012, 10.6, x86_64 Trees: local/main stable/main stable/crypto unstable/main unstable/crypto Xcode: 3.2.6 Max. Fink build jobs: with ... /bin/mv /sw64/src/fin

Re: [Fink-users] Failed: phase compiling: gdb-7.4-1 failed

2012-03-26 Thread Dominique Dhumieres
> Let me know if... > > SetCC: llvm-gcc-4.2 > SetCXX: llvm-g++-4.2 > > also works for you. yes, it does without --disable-werror. > It is rather curious that the gcc-4.2 compiler produces > warnings that the llvm-gcc-4.2 compiler doesn't. The uninitialized warning is an ill-posed problem, so it

Re: [Fink-users] Failed: phase compiling: gdb-7.4-1 failed

2012-03-26 Thread Dominique Dhumieres
Jack, > ... I suspect the easy fix is to just ignore this issue and add > --disable-werror. > ... I just updated to gdb-7.4-1 by appending --disable-werror on ConfigureParams. Thanks for tha answers, Dominique -- This

[Fink-users] Failed: phase compiling: gdb-7.4-1 failed

2012-03-26 Thread Dominique Dhumieres
Updating to gdb-7.4-1 on Package manager version: 0.32.3 Distribution version: selfupdate-rsync Mon Mar 26 14:44:51 2012, 10.6, x86_64 Trees: local/main stable/main stable/crypto unstable/main unstable/crypto Xcode: 3.2.6 Max. Fink build jobs: failed with: ... libtool: compile: gcc -DHAVE_CON

Re: [Fink-users] Failed: phase installing: nurbs-oct324-1.3.6-1 failed

2012-03-23 Thread Dominique Dhumieres
> This is fixed now in CVS. Confirmed. Thanks, Dominique -- This SF email is sponsosred by: Try Windows Azure free for 90 days Click Here http://p.sf.net/sfu/sfd2d-msazure ___

Re: [Fink-users] Failed: PatchFile "/sw/fink/dists/stable/main/finkinfo/10.4-EOL/languages/gcc44.patch" checksum does not match!

2012-03-23 Thread Dominique Dhumieres
> Re-committed not long ago gcc44 is now updated to 4.4.7. Thanks, Dominique -- This SF email is sponsosred by: Try Windows Azure free for 90 days Click Here http://p.sf.net/sfu/sfd2d-msazure ___

[Fink-users] Failed: phase installing: nurbs-oct324-1.3.6-1 failed

2012-03-22 Thread Dominique Dhumieres
Updating to nurbs-oct324-1.3.6-1 failed on Package manager version: 0.32.3 Distribution version: selfupdate-rsync Thu Mar 22 16:11:46 2012, 10.5, powerpc Trees: local/main stable/main stable/crypto unstable/main unstable/crypto Xcode: 3.1.4 Max. Fink build jobs: and Package manager version: 0.

Re: [Fink-users] Failed: phase compiling: qtiplot-qt4-mac-0.9.7.6-6 failed

2012-03-22 Thread Dominique Dhumieres
> Replying to self: I've now figured out how to pass LIBS to qmake. The > new .info will be making it's way to the servers shortly Apparently there is a problem with the propagation of latest commits to the mirrors. Could someone check it? I have done the change manually and it worked. Thanks,

[Fink-users] Failed: PatchFile "/sw/fink/dists/stable/main/finkinfo/10.4-EOL/languages/gcc44.patch" checksum does not match!

2012-03-21 Thread Dominique Dhumieres
On G4 OSX 10.4, updating to gcc44-4.4.7-1001 failed with: Setting runtime build-lock... dpkg-deb -b /sw/src/fink.build/root-fink-buildlock-gcc44-4.4.7-1001 /sw/src/fink.build dpkg-deb: building package `fink-buildlock-gcc44-4.4.7-1001' in `/sw/src/fink.build/fink-buildlock-gcc44-4.4.7-1001_2012.

[Fink-users] Failed: phase compiling: qtiplot-qt4-mac-0.9.7.6-6 failed

2012-03-21 Thread Dominique Dhumieres
Installing qtiplot-qt4-mac-0.9.7.6-6 on Package manager version: 0.32.3 Distribution version: selfupdate-rsync Wed Mar 21 08:44:44 2012, 10.6, x86_64 Trees: local/main stable/main stable/crypto unstable/main unstable/crypto Xcode: 3.2.6 Max. Fink build jobs: failed with: ... g++ -headerpad_max

Re: [Fink-users] Failed: phase compiling: inkscape-0.48.3.1-1 failed

2012-03-12 Thread Dominique Dhumieres
> if you have some hours time, you can (try to) build Inkscape! > Here are the INFO and the PATCH file that worked on PPC Leopard (10.5.8): ... These files work for me out of the box. Thanks, Dominique -- Try before you

Re: [Fink-users] Failed: phase compiling: octcdf-nc4-oct360-1.1.4-1 failed

2012-03-07 Thread Dominique Dhumieres
> I didn't reproduce the error. (same package, same OS and > architecture). Please send me a full build log. [karma] gcc/darwin_buildw% sudo acoc fink update octcdf-nc4-oct360 Password: The following package will be installed or updated: octcdf-nc4-oct360 Setting runtime build-lock... dpkg-deb

Re: [Fink-users] Failed: phase compiling: inkscape-0.48.3.1-1 failed

2012-03-04 Thread Dominique Dhumieres
> Try to insert into the INFO file the line > > if [ `sw_vers -productVersion|cut -f2 -d.` == 5 ] ; then export > CC=gcc-4.2 CXX=g++-4.2 ; fi > > before configure and make are invoked, i.e., instead of the empty line, #117. With the line inserted I reach ... g++-4.2 -DHAVE_CONFIG

[Fink-users] Failed: phase compiling: octcdf-nc4-oct360-1.1.4-1 failed

2012-03-04 Thread Dominique Dhumieres
On ppc 10.5: Package manager version: 0.32.3 Distribution version: selfupdate-rsync Sun Mar 4 21:42:37 2012, 10.5, powerpc Trees: local/main stable/main stable/crypto unstable/main unstable/crypto Xcode: 3.1.4 Max. Fink build jobs: updating to octcdf-nc4-oct360-1.1.4-1 failed with: /sw/bin/mk

[Fink-users] Failed: phase compiling: inkscape-0.48.3.1-1 failed

2012-03-04 Thread Dominique Dhumieres
On ppc 10.5: Package manager version: 0.32.3 Distribution version: selfupdate-rsync Sun Mar 4 21:42:37 2012, 10.5, powerpc Trees: local/main stable/main stable/crypto unstable/main unstable/crypto Xcode: 3.1.4 Max. Fink build jobs: updating to inkscape-0.48.3.1-1 failed with ... config.status

Re: [Fink-users] Can't resolve dependency "file-listing-pm586" for package "libwww-pm586-6.03-1"

2012-02-06 Thread Dominique Dhumieres
> Committed again.c Now I got it!-) > Sorry about that. No problem, thanks for the fix, Dominique -- Try before you buy = See our experts in action! The most comprehensive online learning library for Microsoft develope

Re: [Fink-users] Can't resolve dependency "file-listing-pm586" for package "libwww-pm586-6.03-1"

2012-02-05 Thread Dominique Dhumieres
> Fixed just now, just needed to preserve the previous version of libwww-pm Sorry, but on Sun Feb 5 13:33:57 CET 2012, it is still failing. TIA Dominique -- Try before you buy = See our experts in action! The most comp

Re: [Fink-users] Failed: phase installing: ocs-oct305-0.1.3-1 failed

2012-02-05 Thread Dominique Dhumieres
> This should be fixed now. It was broken on 10.7, too. :-) Confirmed, thanks. Dominique -- Try before you buy = See our experts in action! The most comprehensive online learning library for Microsoft developers is jus

Re: [Fink-users] Failed: phase compiling: imagemagick-6.5.8.10-2 failed

2012-02-03 Thread Dominique Dhumieres
I just build the package using the followin symbolic link: sudo ln -s /sw/lib/gcc4.6/lib/libgomp.dylib /sw/lib/libgomp.dylib Dominique -- Try before you buy = See our experts in action! The most comprehensive online lear

Re: [Fink-users] Failed: phase compiling: imagemagick-6.5.8.10-2 failed

2012-02-03 Thread Dominique Dhumieres
> Libgomp is part of the GCC installation... I have several instances of gcc either through Fink or my own installs. I am not familiar with cmake, how can I check that the right -L is passed? Dominique -- Try before you

[Fink-users] Failed: phase compiling: imagemagick-6.5.8.10-2 failed

2012-02-03 Thread Dominique Dhumieres
On Package manager version: 0.32.1 Distribution version: selfupdate-rsync Fri Feb 3 14:51:25 2012, 10.5, powerpc Trees: local/main stable/main stable/crypto unstable/main unstable/crypto Xcode: 3.1.4 Max. Fink build jobs: updating to imagemagick-6.5.8.10-2 failed with ... CXXMagick++/li

[Fink-users] Can't resolve dependency "file-listing-pm586" for package "libwww-pm586-6.03-1"

2012-02-03 Thread Dominique Dhumieres
On G4 10.4-EOL, updating to libwww-pm586-6.03-1 fails with Can't resolve dependency "file-listing-pm586" for package "libwww-pm586-6.03-1" (no matching packages/versions found) Exiting with failure. TIA Dominique -- Try

[Fink-users] Failed: phase installing: ocs-oct305-0.1.3-1 failed

2012-02-03 Thread Dominique Dhumieres
On both Package manager version: 0.32.1 Distribution version: selfupdate-rsync Fri Feb 3 14:11:01 2012, 10.5, powerpc Trees: local/main stable/main stable/crypto unstable/main unstable/crypto Xcode: 3.1.4 Max. Fink build jobs: and Package manager version: 0.32.1 Distribution version: selfupda

Re: [Fink-users] Failed: phase compiling: octave-atlas-3.0.5-3005 failed

2012-01-24 Thread Dominique Dhumieres
> Thanks for the report. It's fixed in CVS now. Confirmed, thanks. But now I get ans = /sw/src/fink.build/data-smoothing-oct305-1.2.3-3/bld/share/octave/3.0.5/packages panic: Bus error -- stopping myself... /sw/share/octave/3.0.5/scripts/octave-forge-compile.sh: line 7: 32281 Bus error

[Fink-users] Failed: phase compiling: octave-atlas-3.0.5-3005 failed

2012-01-24 Thread Dominique Dhumieres
On Package manager version: 0.31.6 Distribution version: selfupdate-rsync Tue Jan 24 15:33:43 2012, 10.5, powerpc Trees: local/main stable/main stable/crypto unstable/main unstable/crypto Xcode: 3.1.4 compiling: octave-atlas-3.0.5-3005 failed with #!/bin/sh -ev export CFLAGS='-O3 -MD' export C

[Fink-users] Failed: can't install package octave324-atlas-dev-3.2.4-3007

2012-01-24 Thread Dominique Dhumieres
On Package manager version: 0.31.6 Distribution version: selfupdate-rsync Tue Jan 24 15:33:43 2012, 10.5, powerpc Trees: local/main stable/main stable/crypto unstable/main unstable/crypto Xcode: 3.1.4 I cannot install octave324-atlas-dev: /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/bina

Re: [Fink-users] Failed: phase compiling: cyrus-sasl2-2.1.25-1 failed

2012-01-20 Thread Dominique Dhumieres
> It looks like the new SCRAM code in cyrus-sasl2 requires OpenSSL 0.9.8 > or later. I tried disabling the SCRAM code on 10.5. > Please let me know if that works otherwise I'll have to make it > depend on fink's openssl on 10.5. This works: I have updated to cyrus-sasl2-2.1.25-1. Thanks. Now I ha

[Fink-users] Failed: phase compiling: cyrus-sasl2-2.1.25-1 failed

2012-01-19 Thread Dominique Dhumieres
On Package manager version: 0.31.6 Distribution version: selfupdate-rsync Thu Jan 19 14:36:28 2012, 10.5, powerpc Trees: local/main stable/main stable/crypto unstable/main unstable/crypto Xcode: 3.1.4 updating to cyrus-sasl2-2.1.25-1 failed with ... glibtool: compile: gcc -DHAVE_CONFIG_H -I. -I.

Re: [Fink-users] Failed: phase compiling: control-oct343-2.2.4-1 failed

2012-01-13 Thread Dominique Dhumieres
> It should be fixed now. It is! Thanks for the quick fix. Dominique PS For the record I get a lot of warning of the kind ans = /sw64/src/fink.build/control-oct343-2.2.4-1/bld/share/octave/3.4.3/packages mkdir (/var/tmp/oct-zbFaPZ) untar (./control.tar, /var/tmp/oct-zbFaPZ) ld: warning: dupli

[Fink-users] Failed: phase compiling: control-oct343-2.2.4-1 failed

2012-01-11 Thread Dominique Dhumieres
On Package manager version: 0.31.6 Distribution version: selfupdate-rsync Wed Jan 11 16:26:28 2012, 10.6, x86_64 Trees: local/main stable/main stable/crypto unstable/main unstable/crypto Xcode: 3.2.6 updating to control-oct343-2.2.4-1 failed with ... warning: dispatch is obsolete and will be rem

Re: [Fink-users] Failed: phase compiling: kst-1.7.0-1002 failed

2012-01-08 Thread Dominique Dhumieres
Daniel, I have been able to install/rebuild kst-1.7.0-1003 on the platforms I have access to. Note that for ppc-10.4 I had to copy the new files to the 10.4-EOL directory (CCed David Fang for that). Thanks for the fix. Dominique -

[Fink-users] Failed: phase compiling: kst-1.7.0-1002 failed

2012-01-07 Thread Dominique Dhumieres
Building kst-1.7.0-1002 fails on all the platforms I have access to. On Package manager version: 0.31.6 Distribution version: selfupdate-rsync Sat Jan 7 12:42:08 2012, 10.6, x86_64 Trees: local/main stable/main stable/crypto unstable/main unstable/crypto Xcode: 3.2.6 it fails with ... checking

Re: [Fink-users] Failed: phase compiling: hdf5.7-1.8.8-2 failed

2011-12-13 Thread Dominique Dhumieres
> I changed that line a few minutes ago, so maybe the change hasn't > fully propagated yet. It has propagated now;-) Thanks Dominique -- Systems Optimization Self Assessment Improve efficiency and utilization of IT resou

[Fink-users] Failed: phase compiling: hdf5.7-1.8.8-2 failed

2011-12-13 Thread Dominique Dhumieres
Updating to hdf5.7-1.8.8-2 failed on Package manager version: 0.31.5 Distribution version: selfupdate-rsync Tue Dec 13 16:54:12 2011, 10.6, x86_64 Trees: local/main stable/main stable/crypto unstable/main unstable/crypto Xcode: 3.2.6 with gzip -dc /sw64/src/hdf5-1.8.8.tar.gz | /sw64/bin/tar -xf

Re: [Fink-users] Failed: phase compiling: libtool2-2.4.2-1 failed

2011-12-03 Thread Dominique Dhumieres
> On Mac OS X 10.6.8 -> you are using an intel proc, I have reported the problem against ppc. The package has been updated after I have reverted gcc to gcc44 (this conflict with r-base which insists for gcc46). Thanks for the reminder. Dominique -

Re: [Fink-users] Failed: phase compiling: libtool2-2.4.2-1 failed

2011-12-03 Thread Dominique Dhumieres
> You probably removed gcc45 to work around the issue at that time. I had gcc46 installed, I'll try later with gcc44. Thanks, for the answers. Dominique PS What is this ^C doing here? I have interupted configure with cntrl+C

[Fink-users] Failed: phase compiling: libtool2-2.4.2-1 failed

2011-12-02 Thread Dominique Dhumieres
On Package manager version: 0.31.5 Distribution version: selfupdate-rsync Sat Dec 3 00:21:51 2011, 10.5, powerpc Trees: local/main stable/main stable/crypto unstable/main unstable/crypto Xcode: 3.1.4 updating to libtool2-2.4.2-1 get stuck in configure at checking for gccgo... no checking for gc

Re: [Fink-users] Failed: phase compiling: valgrind-3.7.0-1 failed

2011-11-26 Thread Dominique Dhumieres
> Try 3.7.0-2. I explicitly disabled use of mpicc since valgrind was picking it > up from gcc46. This fixes the problem, thanks. Dominique -- All the data continuously generated in your IT infrastructure contains a def

[Fink-users] Failed: phase compiling: valgrind-3.7.0-1 failed

2011-11-24 Thread Dominique Dhumieres
On Package manager version: 0.31.5 Distribution version: selfupdate-rsync Thu Nov 24 21:46:34 2011, 10.6, x86_64 Trees: local/main stable/main stable/crypto unstable/main unstable/crypto Xcode: 3.2.6 updating to valgrind-3.7.0-1 failed with ... Making all in mpi mpicc-I../include -g -O -fno-

[Fink-users] nan-atlas-oct324 still asks for mkoctfile324-gcc46-atlas

2011-11-11 Thread Dominique Dhumieres
On Package manager version: 0.30.2 Distribution version: selfupdate-rsync Fri Nov 11 21:11:13 2011, 10.4, powerpc Trees: local/main stable/main stable/crypto unstable/main unstable/crypto Xcode Version: 2.5-1 installing nan-atlas-oct324 fails because it wants nan-atlas-oct324 which conflicts with

[Fink-users] Failed: phase compiling: xraylib-2.15.0-2 failed

2011-11-11 Thread Dominique Dhumieres
On Package manager version: 0.30.2 Distribution version: selfupdate-rsync Fri Nov 11 21:11:13 2011, 10.4, powerpc Trees: local/main stable/main stable/crypto unstable/main unstable/crypto Xcode Version: 2.5-1 installing xraylib-2.15.0-2 failed with ... libtool: link: gcc -g -O2 -o prdata prdata-p

Re: [Fink-users] Failed: phase compiling: wget-1.13.4-3 failed

2011-11-11 Thread Dominique Dhumieres
> I just updated wget to 1.13.4-4. It uses openssl100, which has the > symbol, instead of the system's openssl. It works fine, thanks, Dominique -- RSA(R) Conference 2012 Save $700 by Nov 18 Register now http://p.sf.net

[Fink-users] Failed: phase compiling: wget-1.13.4-3 failed

2011-11-11 Thread Dominique Dhumieres
On Package manager version: 0.31.4 Distribution version: selfupdate-rsync Fri Nov 11 14:42:12 2011, 10.5, powerpc Trees: local/main stable/main stable/crypto unstable/main unstable/crypto Xcode: 3.1.4 updating wget-1.13.4-3 failed with ... gcc -O2 -Wall -Wl,-dead_strip_dylibs -L/sw/lib:-L/sw/li

Re: [Fink-users] Failed: phase compiling: arpack-96patched-6 failed

2011-11-10 Thread Dominique Dhumieres
> Again, added. Found! > There may be more. ... Not so far;-) but I have the following conflict: /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-powerpc/10.4-EOL/sci/octave324-atlas-dev_3.2.4-601_darwin-powerpc.deb (Reading database ... 467892 files and directories currently

Re: [Fink-users] Failed: phase compiling: arpack-96patched-6 failed

2011-11-09 Thread Dominique Dhumieres
> > Can't resolve dependency "mapping-oct324" for package > ... > Also added. I somehow missed that one when validating in the unstable > tree. Thanks, but now it fails with Can't resolve dependency "multicore-oct324" for package "bundle-octave324-atlas-20111005-1" (no matching packages/versions

Re: [Fink-users] Failed: phase compiling: arpack-96patched-6 failed

2011-11-08 Thread Dominique Dhumieres
> ... It should now be fixed. ... Confirmed, thanks. I have two more glitches: ... gzip -dc /sw/src/octave-3.2.4.tar.gz | /sw/bin/tar -xf - --no-same-owner --no-same-permissions [ -r /sw/fink/dists/stable/main/finkinfo/10.4-EOL/sci/octave-glpk.patch ] Removing runtime build-lock... Removing bu

[Fink-users] Failed: phase compiling: arpack-96patched-6 failed

2011-11-07 Thread Dominique Dhumieres
On Package manager version: 0.30.2 Distribution version: selfupdate-rsync Mon Nov 7 14:43:30 2011, 10.4, powerpc Trees: local/main stable/main stable/crypto unstable/main unstable/crypto Xcode Version: 2.5-1 updating to arpack-96patched-6 failed with ... ( cd tmp; ar -x /sw/src/fink.build/arpac

Re: [Fink-users] Failed: phase compiling: octave-atlas-x11-3.4.3-101 failed

2011-11-05 Thread Dominique Dhumieres
Hi Sean, > configure: WARNING: I need GNU Readline 4.2 or later I got the same failure while updating the other octave-atlas packages as well. I have found out that for some reason /sw64/lib/libreadline.dylib has disappeared. I solved the problem with the following symbolic link /sw/lib/libreadl

Re: [Fink-users] Failed: phase compiling: gmsh-2.5.0-2 failed

2011-10-18 Thread Dominique Dhumieres
> It should be fixed now. ... Confirmed, thanks for the fix, Dominique -- All the data continuously generated in your IT infrastructure contains a definitive record of customers, application performance, security threats

[Fink-users] Failed: phase compiling: gmsh-2.5.0-2 failed

2011-10-17 Thread Dominique Dhumieres
On ppc OSX 10.5 updating to gmsh-2.5.0-2 failed with ... Gmsh has been configured for MacOSX with the following options: Ann Bamg Blas(VecLib) Chaco DIntegration FlTree Fltk GMP Gmm Jpeg Kbipack Lapack(VecLib) Lua MathEx Mesh Metis Mpeg NativeFileChooser Netgen NoSocklenT NoVsnprintf OpenGL Par

[Fink-users] Failed: phase compiling: video-oct324-1.0.2-1 failed

2011-10-06 Thread Dominique Dhumieres
On G5/10.5: Package manager version: 0.31.2 Distribution version: selfupdate-rsync Thu Oct 6 11:37:48 2011, 10.5, powerpc Trees: local/main stable/main stable/crypto unstable/main unstable/crypto Xcode: 3.1.4 building video-oct* fails with ... /sw/include/libavcodec/avcodec.h:525: warning: attr

Re: [Fink-users] More glitches related to octave

2011-10-03 Thread Dominique Dhumieres
Here is what I get at configure time: configure: defining FFLAGS to be -O3 -ff2c checking whether /sw64/bin/gfortran-fsf-4.6 accepts -ffloat-store... yes setting F77_FLOAT_STORE_FLAG to -ffloat-store checking for sgemm_ in -Wl,-framework,Accelerate... yes checking whether LSAME is called correctly

Re: [Fink-users] More glitches related to octave

2011-10-03 Thread Dominique Dhumieres
[macbook] f90/bug% dpkg -L octave octave324-shlibs octave324|xargs file|fgrep 'Mach-O'|cut -f1 -d:|xargs otool -L|fgrep -B4 -eAccelerate [macbook] f90/bug% dpkg -L octave octave305-shlibs octave305 | xargs file | fgrep 'Mach-O' | cut -f1 -d: | xargs otool -L | fgrep -B4 -eAccelerate /sw64/lib/oct

[Fink-users] More glitches related to octave

2011-10-03 Thread Dominique Dhumieres
Hi Alex, I have finally installed bundle-octave* on my G5/OSX 10.5 (Atlas variant) and intel_64/OSX 10.6 (not yet on G4/OSX 10.4). Testing octave I see the following warning (both systems): octave:1> pkg load all warning: addpath: /sw/lib/octave/3.2.4/packages/ocs-0.1.1/powerpc-apple-darwin-api

Re: [Fink-users] Failed: phase compiling: linear-algebra-oct324-2.0.0-1 failed

2011-09-28 Thread Dominique Dhumieres
> I did, however, see it on 10.6/x86_64 using octave324 (no atlas). This is my configuration leading to the problem. I use atlas on ppc only (because it is faster than the now old veclib). > I'll put out new Octave revisions shortly. Thanks. There are a few typos in bundle-octave.info: odepkg%

[Fink-users] Failed: phase compiling: linear-algebra-oct324-2.0.0-1 failed

2011-09-27 Thread Dominique Dhumieres
Installing linear-algebra-oct324-2.0.0-1 failed with ... ans = /sw64/src/fink.build/linear-algebra-oct324-2.0.0-1/bld/share/octave/3.2.4/packages Undefined symbols: "_dggsvd_", referenced from: GSVD::init(Matrix const&, Matrix const&, GSVD::type)in dbleGSVD.o "_zggsvd_", referenced from

Re: [Fink-users] Glitches related to octave

2011-09-13 Thread Dominique Dhumieres
> Did anyone happen to notice during octave324-atlas's build: If was too sleepy (2am local time), I saw that octave324-atlas 3.2.4-21 was built without atlas. 3.2.4-22 seems to work as expected (build in progress). The only glitches I have spotted so far are some configure:12470: flag-sort -r g

Re: [Fink-users] Glitches related to octave

2011-09-11 Thread Dominique Dhumieres
David, > During my testing, I found that I *needed* -ff2c. > I'll look into this again later today, now that I have atlas built. > The -ff2c should be conditional on whether system-atlas or fink-atlas is > used. This is what I guessed from the comments. > I'm away from computer the rest of today

Re: [Fink-users] Glitches related to octave

2011-09-10 Thread Dominique Dhumieres
> Oh _ I see that on 10.4-EOL this was NOT fixed ... > D. Fang is apparently taking care of that; in the > meantime, just remove the '-ff2c' flags from the FFLAGS > in the info file, > and do the same if needed for arpack and qrupdate, then > rebuild first the latter 2,then octve I'll do so, but i

Re: [Fink-users] Glitches related to octave

2011-09-10 Thread Dominique Dhumieres
> This is clearly the right explanation, but is your file > octave-3.2.4.info up to date ? i octave324-atlas3.2.4-11 and [pbook] dominiq/tempo% fink list -o Information about 11921 packages read in 33 seconds. (i) atlas 3.9.11-12 Portably op

Re: [Fink-users] Glitches related to octave

2011-09-10 Thread Dominique Dhumieres
On my G5-10.5 mkoctfile -p BLAS_LIBS returns /sw/lib/liblapack.dylib /sw/lib/libf77blas.dylib while on my G4-10.4 it returns a blank line. I have rebuild octave324-atlas on the G4 and noticed in the configure stage: ... checking whether CDOTU is called correctly from Fortran... no checking wheth

Re: [Fink-users] Glitches related to octave

2011-09-08 Thread Dominique Dhumieres
> Sanity check: if you are passing --build-as-nobody, the octave-forge > packages don't compile succesfully with it. Well, I don't do anything special and all the other packages are built: i data-smoothing-oct324 1.2.0-2Data smoothing package for Octave i fits-oct3

Re: [Fink-users] Glitches related to octave

2011-09-08 Thread Dominique Dhumieres
Failed: phase compiling: gsl-oct324-1.0.8-1 failed on Package manager version: 0.30.2 Distribution version: selfupdate-rsync Thu Sep 8 22:26:02 2011, 10.4, powerpc Trees: local/main stable/main stable/crypto unstable/main unstable/crypto Xcode Version: 2.5-1 with find . -name NOINSTALL -print

Re: [Fink-users] Glitches related to octave

2011-09-08 Thread Dominique Dhumieres
Alex, Thanks for the fixes. In my previous mail I failed to mentioned 10.4-EOL. It requires (2) also and fltk-backend.patch is missing. TIA Dominique -- Doing More with Less: The Next Generation Virtual Desktop What ar

[Fink-users] Glitches related to octave

2011-09-08 Thread Dominique Dhumieres
Alex, First, thanks for the fix of struct-oct305-1.0.9-1. I have continued to play with octave and friends and I have found the following glitches: (1) tsa-4.1.1.tar.gz does not exist, but tsa-4.1.1.tgz does. (2) fltk-backend-oct-3.2.4.info depends on qrupdate, but not on qrupdate-atlas. This is

[Fink-users] Failed: phase compiling: struct-oct305-1.0.9-1 failed

2011-09-05 Thread Dominique Dhumieres
While updating to optim-oct305 1.0.16-1, struct-oct305-1.0.9-1 failed with reading commands from /sw/share/octave/3.0.5/m/startup/octaverc ... done. ans = /sw/src/fink.build/struct-oct305-1.0.9-1/bld/share/octave/3.0.5/packages mkoctfile: stripping disabled on this platform arefields.cc: In funct

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