Hi Bruce,
This is the sequence details:
- Axial FLAIR: Plane=AXIAL; Acquisition Type=2D; Coil=8HRBRAIN; Field
Strength=3.0 tesla; Flip Angle=90.0 degree; Manufacturer=GE MEDICAL
SYSTEMS; Matrix X=256.0 pixels; Matrix Y=256.0 pixels; Matrix Z=42.0 ; Mfg
Model=Signa HDxt; Pixel Spacing
and can you give us details of your FLAIR acquisition? What are the voxel
sizes? What sequence?
On Tue, 20 Feb 2018, Shim Hee Youn wrote:
> Hi Bruce,
>
> Thanks for your email. I am using Freesurfer version 6 and the command I
> used to run is this:
>
> qsub -m n -o o -e e -V recon-all -subjid
Hi Bruce,
Thanks for your email. I am using Freesurfer version 6 and the command I
used to run is this:
qsub -m n -o o -e e -V recon-all -subjid ${Z}_${Image}_fs -i
${step1LocalDir}/$T1 -FLAIR ${step1LocalDir}/${FLAIR} -FLAIRpial -all
Best Regards,
Shim Hee Youn
Research Assistant
Multimodal
Hi Shim Hee
we need to know what commands you ran, the full screen output from them,
and what version of FS you are using (at least!)
cheers
Bruce
On Mon, 19 Feb 2018, Shim Hee Youn wrote:
Hi Freesurfer team,
I am currently using ADNI dataset to run Freesurfer Recon all for MPRAGE, SPGR
