Re: [Freesurfer] Trouble performing Monte Carlo simulation constrained to label

2013-01-07 Thread Douglas N Greve
Hi Susan, mri_glmfit-sim did not exist in 4.X. If you want to use 4.X, then you'll need to run mri_glmfit with the simulation options. If I were you, I would install a version of 5.X. You can run the glm and MC simulations using 5.X on data created by 4.X, just don't rerun recon-all using 5.X

[Freesurfer] Trouble performing Monte Carlo simulation constrained to label

2013-01-07 Thread Susan Alice McLaughlin
Hi, I am trying to run a Monte Carlo simulation on functional data constrained to a label using Freesurfer 4.0.1. I did not use Qdec for data analysis. Looking at a previous post - https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2010-November/016290.html - I see that I should: 1) constr