can you send your recon-all.log file?
On 9/15/2022 4:04 PM, James Brown wrote:
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Hi Dr Greeve,
I ran recon-all using the flag -flair. I couldn't find any command in
recon-all.log that normalizes the flair images. It seems just
normalization to the T1.
I
the easiest way to think about it is in terms of matrices. You have an
affine matrix M already that converts from col,row,slice to xyz. When
you flip the 2nd dim, it is like you are applying a matrix R to the new
col,row,slice to get the old col,row,slice, so your new affine matrix
will be
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Dear Freesurfer Experts
I am trying use segmentHA_T1.sh:
During the registration of imageDump.mgz to target
hippoAmygBinaryMask_autoCropped.mgz, I get the warning:
* WARNING: Registration did not converge in 5 steps!
* Problem might be
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Just want to confirm the following change is good to use to force use of
ants-n3 with FS 7.2.
It appears as though FS 7.2 with ants-n3 gives us better results than the
default n4.
We changed /etc/recon-config.yaml to the following, and it appears
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I would like a/the password for extracting the 7z-file of the ubuntu virtual
disk image (vdi).
Thank you in advance :)
Br,
Christian Stald Skoven
Ph.D., Post Doc, Preclinical MRI
CFIN, AUH
___
Freesurfer
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I received the email below. any idea how I can send the recon-all log file
to Dr Greeve? Thank you
our mail to 'Freesurfer' with the subject
Re: White matter normalization
Is being held until the list moderator can review it for approval.
The
