Thanks Doug! This indeed worked. (Just had to run mktemplate-sess and
mkbrainmask-sess separately.)
Evelina
On Dec 13, 2011, at 5:48 PM, Douglas N Greve wrote:
You can try specifying the functional stem in mkanalysis-sess with -funcstem
yourfuncstem (assuming your data are
Hi,
After I run step 2 of tracula (trac-all -c config_DTI_B.txt -bedp), I
am missing multiple bedpost output files (e.g., mergedph1samples.nii).
Examining the output, it looks like data from only one slice was
written (dmri.bedpostX/diff_slices/data_slice_0002). This issue has
replicated across
Hi Gonzalo,
it's the distance in mm to extend the cc off the midline. So -t 2 means
1mm at the midline and 2mm in each direction so 5mm total
cheers
Bruce
On Fri, 16 Dec
2011, Gonzalo Rojas Costa wrote:
Hi:
For example, if I execute the mri_cc command with -t 2, mri_cc
shows me setting
Hi Scott - Are there any files created directly under dmri.bedpostX?
a.y
On Fri, 16 Dec 2011, Scott Hayes wrote:
Hi,
After I run step 2 of tracula (trac-all -c config_DTI_B.txt -bedp), I
am missing multiple bedpost output files (e.g., mergedph1samples.nii).
Examining the output, it looks
Hi Tracula team,
I have just successfully processed my first scan through all
the Tracula steps! Though, I have to say it could have gone much smoother /
quicker if the documentation on the wiki were a little more up-to-date. I
realize it's an ongoing struggle to keep
Hi Shannon,
Thank you for the detailed email, outlining some of the aspects of the
tutorial that we could improve. We really appreciate your effort in
putting these things together and will definitely try to address your
concerns to the best of our ability.
Q2. I updated the wiki to correct the
Hi,
The following files directories are listed directly under dmri.bedpostX:
bvals commands.txtlogs
nodif_brain_mask.nii.gz
bvecs diff_slices monitor xfms
--Scott
Anastasia Yendiki
Fri, 16 Dec 2011
I've looked through a number of freesurfer papers, but haven't been able to
find the answer to what I am looking for and was hoping someone had the
references easily available.
(1) What is the reliability of regional volumes generated from freesurfer
over time?
(2) What is the accuracy of labels
Hi Scott - Could you try running bedpostx on the dmri/ directory directly
and see what if any error you get?
a.y
On Fri, 16 Dec 2011, Scott Hayes wrote:
Hi,
The following files directories are listed directly under dmri.bedpostX:
bvals commands.txtlogs
