Dear List
I get the following error: „550 Failed to change directory.”
I tried on two operating systems. The wget also doesn’t work. Says the file
doesn’t exist.
Do you get the same errors, or is it specific to my system?
Best
Lau
___
Freesurfer
Hi Lau - There is a scheduled outage of the Martinos Center storage
cluster all day today. Please try again later, it has nothing to do with
your system.
a.y
On Tue, 19 Aug 2014, Lau Møller Andersen wrote:
Dear List
I get the following error: „550 Failed to change directory.”
I tried on
Thanks ZK,
I got the following message:
bash: /usr/local/freesurfer/bin/tkmedit: /bin/tcsh: bad interpreter: No
such file or directory
On Tue, Aug 12, 2014 at 5:29 PM, Z K zkauf...@nmr.mgh.harvard.edu wrote:
Ali,
I have not encountered this issue before. Could you please provide a
what is your mri_vol2surf command line? Can you view the output in
tksurfer? What is your matlab command line?
On 8/18/14 3:34 AM, Nadine Schlichting wrote:
Dear Freesurfers,
I am struggling with a very basic step at the very beginning of my
processing pipeline.
This is what I've done:
I have a patch, but I can't get to it right now because massive computer
upgrades are happening in the Martinos center. Hopefully that will be
done by tomorrow.
doug
On 8/18/14 10:39 AM, Zamroziewicz, Marta Karolina wrote:
Good morning,
I wrote several weeks ago about a bbregister
By using --sfmt curv and --tfmt curv you are saying that the input and
output formats are curv. But they are nifti. Try removing the --sfmt and
--tfmt (it will automatically detect that they are nifti)
doug
On 8/18/14 10:40 AM, Matthieu Vanhoutte wrote:
Dear experts,
I try to project on
Depending on the version of FS that you are using, the data you want may
already be part of the MC simulation output in a file called something
like csdbase.y.ocn.dat
On 8/17/14 2:39 PM, Katharina Zech wrote:
Hi Doug,
I did a full monte-carlo simulation. And now I am trying to do a ROI
I think the answers to both questions is no, sorry
doug
On 8/17/14 6:34 PM, Vy Dinh wrote:
Dear Surfers,
In qdec, one can obtain a list of the significant clusters for a
contrast by clicking the find clusters... button. Is there a file
equivalent or button in Freeview that can give us that
Sorry to interrupt.
I have a relevant question about the correlation analysis. If the age has
been controlled for when surface-based analysis is done, do we need to
controll for age again when we do subsequent correlational analysis in SPSS?
On Tue, Aug 19, 2014 at 5:01 PM, Douglas Greve
Yes, you are just getting the raw data from the ocn.dat file.
On 8/19/14 11:05 AM, yaya ya wrote:
Sorry to interrupt.
I have a relevant question about the correlation analysis. If the age
has been controlled for when surface-based analysis is done, do we
need to controll for age again when
Hi Bastian,
yes, I have some code to do what you want. You would duplicate and flip
the good hemisphere in the image and then run FS on the symmetric heads.
This can be done via robust_register and (mis)-using the mid space.
You can find some description of this procedure here:
*Robust and
Hi Bastian,
this is in cases where you need to make the images symmetric so that
recon-all processing works, but then do the analysis on the original
(non flipped) hemisphere in each subject. You should not use this to do
a point wise comparison between left (original healthy) and flipped
Bastian, you can use the interhemispheric analysis to do this study. See
https://surfer.nmr.mgh.harvard.edu/fswiki/Xhemi
A few months ago, someone was trying to do the same thing (or was it
you?). In any event, there should be some info in our mail archives
doug
On 8/19/14 2:48 PM, Martin
Hello Freesurfer experts,
In a study I found significant differences in the volume of the left and
right vessels of the freesurfer atlas.
I wanted to know what regions are included in that ROI and if there are any
known functions of these regions.
Thank you
Mohammed Goryawala, PhD
Miller
I believe their function is to carry blood from one place to another.
Peace,
Matt.
From: Mohammed Goryawala mgory...@fiu.edu
Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu
Date: Tuesday, August 19, 2014 at 1:55 PM
To: Freesurfer@nmr.mgh.harvard.edu
Hello Alex,
I created the FreeSurfer VM and you are correct that the Virtual Box
host is 32bit. I cant remember exactly why I did it that way, but I
suspect it may have been in an effort to reduce overall size, as the
gzipped size of the .vdi file is 9gigs. Also, it was created more as
matter
Hi,
While doing a high resolution ex vivo recon job, I came across the error
mri_tessellate: max vertices 100 exceeded
As mentioned in the threads
Hi all,
I'm trying to use Freeview to display subcortical regions in aseg.mgz with
a custom color lookup table. RGB colors will indicate on a jet scheme how
well that region's volume correlates to performance on a behavioral
measure. In other words, an R^2 coefficient of -1 is dark blue, 0 is
I work with Alex. If you or anyone else can expound a bit more upon this
statement on the website (http://surfer.nmr.mgh.harvard.edu/fswiki/Download):
Important Note! When processing a group of subjects for your study, it is
essential to process all your subjects with the same version of
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