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If you are running Virtualbox to host linux on a windows machine sharing a
folder from a windows NTFS file system, then it may not work to create soft
links in linux on the mounted share w/o setting some things on the Windows
side. I’m not up on
Hi Paul
Have you run recon-all on your data? If so, then there will be .annot files
that you can use to look up what parcellation unit is at that coordinate in any
given subject. Or closest to that coordinate as in general it may not be in
the cortex
Cheers
Bruce
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Hi,
I think the problem is caused because Zhaoguang uses a VirtualBox share
folder.
The path "/media/sf_T1/" indicates the path is a shared folder of
VirtualBox.
Symbolic links can be used on some certain conditions.
Source:
First, try running recon-all on the mni152 template
Find the vertex closest to your seed coordinate
You can create a circle on the surface with something like this (where
vertexno is the vertex number you found above)
mri_volsynth --dim nvertices 1 1 1 --pdf delta --delta-crsf vertexno 1 1
1
Look in /media/sf_T1/recon/demo3/surf
Does lh.white.preaparc.H exist?
If so, does lh.white.H exist?
If not, what happens when you run
ln -s lh.white.preaparc.H lh.white.H
in that folder?
On 8/5/2021 1:41 AM, guang wrote:
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Hello FreeSurfer Developers,
I'm
what are the actual values ("black" does not mean much)
On 8/5/2021 1:21 AM, Ammar Shujaa wrote:
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Hello FreeSurfur developers,
When I did:
mergeseg --src brainmask.bin.mgz --merge both.hippo.mgz --o bm+hippo.mgz
The color of the hippo segment
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Hello FreeSurfur developers,
When I did:
mergeseg --src brainmask.bin.mgz --merge both.hippo.mgz --o bm+hippo.mgz
The color of the hippo segment (both.hippo) in the bm+hippo.mgz file has become
black. Is there any way I can do to change the color of
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Dear FS community,
My ultimate goal is to do a seed of interest connectivity analysis.
Accordingly, I have MNI coordinates for a seed (e.g., left DLPFC). However,
for the softwares I am using (CONN toolbox and Brainstorm), I need a .annot
file which
