arvard.edu
> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl
> [fis...@nmr.mgh.harvard.edu]
> Sent: Thursday, September 29, 2016 1:14 PM
> To: Douglas N Greve
> Cc: freesurfer@nmr.mgh.harvard.edu; Crawford, Anna; Anna Crawford
> Subject: Re: [Freesurfer] Infalted
, September 29, 2016 1:14 PM
To: Douglas N Greve
Cc: freesurfer@nmr.mgh.harvard.edu; Crawford, Anna; Anna Crawford
Subject: Re: [Freesurfer] Infalted/Label
you can also look at the vertex index of the first entry in the label
file and type that into the "cursor" field in freeview so
016 1:13 PM
> To: Crawford, Anna; Bruce Fischl
> Cc: freesurfer@nmr.mgh.harvard.edu; Anna Crawford
> Subject: Re: [Freesurfer] Infalted/Label
>
> Sounds like it. View the label on the volume while displaying the
> surfaces in the volume and see if they intersect
>
>
> On
Fischl
Cc: freesurfer@nmr.mgh.harvard.edu; Anna Crawford
Subject: Re: [Freesurfer] Infalted/Label
Sounds like it. View the label on the volume while displaying the
surfaces in the volume and see if they intersect
On 09/29/2016 01:12 PM, Crawford, Anna wrote:
> I added the --paint option wh
you can also look at the vertex index of the first entry in the label
file and type that into the "cursor" field in freeview so it will go to
that point. My guess is that it does intersect the surface, otherwise the
label indices would have stayed -1
On Thu, 29 Sep 2016, Douglas N Greve wrote:
I added the --paint option which seemed to run successfully. I loaded it as a
label on the inflated surface and it did not crash, but I do not see it
anywhere on the surface. Does this just mean that I didn't actually draw it on
the surface? As in, everything was done correct, the location of
That is a volume-based label. Try using the --paint option to
mri_label2label to convert it to a surface-based label (assuming it is
actually on the surface). Run mri_label2label with --help to get an example
On 09/29/2016 12:38 PM, Crawford, Anna wrote:
> This is the output on label2label.
This is the output on label2label. The first colum of the created column is -1.
mri_label2label --srcsubject segfs --srclabel
/mnt/netScratch/crawforda/BrainStem/study11074/S2sdt/segfs/label/Testing1.label
--trgsubject segfs --trglabel Testing1N.label --regmethod volume
srclabel =
I'll cc the list, which I should have done the first time. No, you
didn't do anything wrong. This is what mri_label2label should do - sample
these locations onto the surface you specify and fill in the vertex
indices. Check the output of label2label and see if it has values >= 0
cheers
Bruce
