uot; is missing in all these recons.
> I see aseg.mgz, aseg+aparc.mgz and wmparc.mgz
>
>
>> Original Message ----
>> Subject: Re: [Freesurfer] aparc.DKTatlas+aseg.mgz
>> Local Time: August 31, 2017 4:04 PM
>> UTC Time: August 31, 2017 8:04 PM
>> Fro
---
> Subject: Re: [Freesurfer] aparc.DKTatlas+aseg.mgz
> Local Time: August 31, 2017 4:04 PM
> UTC Time: August 31, 2017 8:04 PM
> From: fis...@nmr.mgh.harvard.edu
> To: John Anderson <john.ande...@protonmail.com>, Freesurfer support list
> <freesurfer@nmr.mgh.harvard.edu
t of FS5.3 or FS6.0
I am a bit confused about this!! Is this atlas FALIR-based or I am doing
something wrong?!
Original Message
Subject: Re: [Freesurfer] aparc.DKTatlas+aseg.mgz
Local Time: August 31, 2017 3:11 PM
UTC Time: August 31, 2017 7:11 PM
From: ebo...@mgh.h
derson
<john.ande...@protonmail.com>
Sent: Thursday, August 31, 2017 3:25:43 PM
To: Boyd, Emma
Cc: Freesurfer support list
Subject: Re: [Freesurfer] aparc.DKTatlas+aseg.mgz
Hi Emma,
Thank you for your response.
I am running my recons using V5.3 and V6.0
In the data base I have ~200 T1 images and for
flag FLAIR i don't see the file
aparc.DKTatlas+aseg.mgz
as an output of FS5.3 or FS6.0
I am a bit confused about this!! Is this atlas FALIR-based or I am doing
something wrong?!
> Original Message
> Subject: Re: [Freesurfer] aparc.DKTatlas+aseg.mgz
> Local Time: Augu
oun...@nmr.mgh.harvard.edu> on behalf of John Anderson
<john.ande...@protonmail.com>
Sent: Thursday, August 31, 2017 12:17 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] aparc.DKTatlas+aseg.mgz
Dear experts,
looking into the output of Freesurfer in this page
https://surfer.nmr.mgh.harvar
Dear experts,
looking into the output of Freesurfer in this page
https://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllOutputFiles
I see that there should be a file named "aparc.DKTatlas+aseg.mgz". Is this
atlas can be generated with the presence of FLAIR images.
When i run recon-all without FLAIR
Dear experts,
looking into the output of Freesurfer in this page
https://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllOutputFiles
I see that there should be a file named "aparc.DKTatlas+aseg.mgz". Do I need
FLAIR images to get this file.
I ran the command recon-all --s subj --all and I can';t find
