From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Douglas N. Greve
Sent: Sunday, July 10, 2022, 4:09 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Tksurfer Error
tksurfer is depracated. Try using tksurferfv instead
On 6/29/2022 4
tksurfer is depracated. Try using tksurferfv instead
On 6/29/2022 4:33 PM, Rachel Wagner wrote:
External Email - Use Caution
Hello,
I am attempting to paint my spm functional data onto freesurfer’s
anatomical image.
I ran this code: tksurfer bert lh inflated -overlay updated.img
External Email - Use Caution
The tksurfer command is deprecated/no longer supported.
You could try using freeview directly or runtksurferfv, which may take
the same options as tksurfer but run freeview to display things.
- R..
On Jun 29, 2022, at 16:33, Rachel Wagner
External Email - Use Caution
Hello,
I am attempting to paint my spm functional data onto freesurfer’s anatomical
image.
I ran this code: tksurfer bert lh inflated -overlay updated.img -overlay-reg
register.dat
And got this error:
Tcl_Init failed: Can't find a usable init.tcl
Hi,
I have been experiencing an error with tksurfer. It occurs when I am
trying to generate an occipital patch, following these instructions:
http://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferOccipitalFlattenedPatch
I open a surface using: tksurfer SUBJ lh inflated -curv lh.curv
Following the
Hi,
In response to the message below, I have been getting the exact
same error when running tksurfer on a particular workstation.
tksurfer does display correctly, but the drawing is very slow, as if
running remotely (or not using the video card). This happens with versions
3.0.5 and 4.5.0.
I
Dear freesurfer community,
I am currently trying to view one of the surfaces generated by recon-all
command in tksurfer but when I enter the command:
tksurfer LuceHR_FS_SURF lh inflated.nofix
I receive a series of errors that look like this:
Received X error!
Error code : 1
Request
have you tried clicking the redraw button?
On Wed, 10 Feb 2010, Daniel
Ferreira Padilla wrote:
Dear Freesurfer users,
I hope you could help me with that problem. I do the recon-all preprocessing
step and then I try tksurfer. But the following error comes up. Moreover
tksurfer window open
...@nmr.mgh.harvard.edu]
Enviado el: miércoles, 10 de febrero de 2010 15:49
Para: Daniel Ferreira Padilla
CC: freesurfer@nmr.mgh.harvard.edu
Asunto: Re: [Freesurfer] tksurfer error
have you tried clicking the redraw button?
On Wed, 10 Feb 2010, Daniel
Ferreira Padilla wrote:
Dear Freesurfer users,
I
-Mensaje original-
De: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu]
Enviado el: miércoles, 10 de febrero de 2010 15:49
Para: Daniel Ferreira Padilla
CC: freesurfer@nmr.mgh.harvard.edu
Asunto: Re: [Freesurfer] tksurfer error
have you tried clicking the redraw button?
On Wed, 10 Feb
Hi,
I can't seem to run tksurfer in Fedora 7. We are using a Wacom Tablet
monitor, and since we installed it, we cannot run tksurfer. We get the
following error:
surfer: ### redraw failed: no gl window open
surfer: single buffered window
surfer: tkoInitWindow(fsaverage)
Can't create a
Hi:
How can I solve the following error ?
ubuntu:~ tksurfer rezende rh pial
surfer: current subjects dir: /home/image/bin/freesurfer/subjects
surfer: not in scripts dir == using cwd for session root
surfer: session root data dir ($session) set to:
surfer: /home/image
surfer: Reading
Hi Gonzalo,
are you running over vnc or something similar?
Bruce
On Thu, 30 Jul 2009, Gonzalo
Rojas wrote:
Hi:
How can I solve the following error ?
ubuntu:~ tksurfer rezende rh pial
surfer: current subjects dir: /home/image/bin/freesurfer/subjects
surfer: not in scripts dir == using
It seems that you are using running this Centos inside a VMWare.
TkSurfer works fine in Virtualbox (2.1.4) but I'm not sure it'll do in
current vmware
---
Pedro Paulo de M. Oliveira Junior
Diretor de Operações
Netfilter SpeedComm Telecom
FYI, Freesurfer running with a VirtualBox on Windows is available in
v4.2.0 (not yet v4.3.0) here:
ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/4.2.0
Get the file FSVboxVDI_PPJ.rar and read the file README-
FSVboxVDI_PPJ.txt.
This was created and tested by Pedro Paulo de Magalhães
Hi all,
I am running freesurfer on CentOS (5.2-x86_64). I get the folowing error
when I launch tksurfer:
surfer: ### redraw failed: no gl window open.
The result is that no surface is shown.
Any advice on how to solve the problem?
Thanks,
Elisa
___
If you are using tcsh
setenv doublebufferflag 1
in bash
export doublebufferflag=1
---
Pedro Paulo de M. Oliveira Junior
Diretor de Operações
Netfilter SpeedComm Telecom
--- Novo Netfilter 3.0 www.netfilter.com.br
On Wed, Apr 1, 2009
Thanks you. I actually tried this already (I saw this solution was suggested
to users that experienced the same problem). Unfortunately this is not
working, I still get the error message:
surfer: ### redraw failed: no gl window open
Is there anything else that you would suggest to try?
Thank you
Try running glxgears
Can you post the output of *dmesg *command
2009/4/1 Elisa Dell'Oglio dellog...@bwh.harvard.edu
Thanks you. I actually tried this already (I saw this solution was
suggested to users that experienced the same problem). Unfortunately this is
not working, I still get the
I suggest you to migrate your virtual machine to VirtualBox:
http://www.virtualbox.org/
Have you tried setting the autoredraw on in tksurfer interface?
---
Pedro Paulo de M. Oliveira Junior
Diretor de Operações
Netfilter SpeedComm Telecom
tksurfer: error while loading shared libraries: libglut.so.3: cannot
open shared object file: No such file or directory.
Do you have glut installed? If you are running a Red Hat box, you can
check by:
$ rpm -qa | grep glut
Or just looking for libglut* in /usr/lib or /usr/local/lib.
--
Kevin
21 matches
Mail list logo
