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Hi
I can run the command through Matlab now (with FreeSurfer 6.0).
Many thanks,
Haiyang
> On Nov 13, 2019, at 1:50 PM, fsbuild wrote:
>
> Hello hj23,
>
> If you are running the 6.0.0 freesurfer Mac release, then you can try
> downloading this
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Hello FreeSurfer Developers,
I’m attempting to run FreeSurfer commands via Matlab [system(‘fscmd’)]. Some of
the commands work but some don’t, though all the commands work well when run in
Terminal.
Commands work in both Terminal and Matlab:
When
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Dear all,
We are organizing a conference on “Emerging Topics in Artificial
Intelligence”, which will take place from 23-27 August 2020 in San Diego,
USA.
The aim of this conference is to bring together experts from different
fields to discuss new
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Hi Bruce,
You are actually right, wh.mgz has some skull left, this is what is problably
causing the inflated surfaces to have so many defects. Thanks for the info.
Cheers,
Vicente Ferrer
Predoctoral Researcher BCBL
www.bcbl.eu
Legal
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Hello hj23,
If you are running the 6.0.0 freesurfer Mac release, then you can try
downloading this patch. You will need to double click on the archive to
expand it and then follow the instructions in README.patch. I think you
will also need admin
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Hi FreeSurfer community,
I’m using fspalm to correct multiple comparisons for vertex-based cortical
thickness analysis. It ran successfully and several clusters survived after
correction for multiple comparisons. Below is the code I used for
If you have an anatomical MR that you have run through recon-all, then
just use that one instead of bert in your steps below
ps. Please remember to post to the FS list and not to us personally
On 11/12/19 8:41 PM, an wrote:
>
> External Email - Use Caution
>
> Many thanks.
>
> I got the
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-- Forwarded message -
From: Dalton Bermudez
Date: Wed, Nov 13, 2019 at 1:54 PM
Subject: recon-all error: ltMNIreadEx: could not open file
transforms/talairach.xfm
To:
Dear FreeSurfer Developers,
I am attempting to obtain a average
I'll have to leave this one for Kersten as it appears that the LME stuff
is generating and inf value
On 11/12/19 7:05 PM, Bronwyn Overs wrote:
>
> External Email - Use Caution
>
> Hi Douglas,
>
> Yes I have looked at it in Freeview and I have attached a screenshot
> for your reference.
Dear Isabella,
You need to download the development version to run segmentHA_T1.sh. However,
you do not need to rerun your subjects through the development recon-all (in
fact, you should *never* do that).
If/when you write a paper, you would state that you used FS 6.0 to recon the
cases, and
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Hello,
For running recon-all or tracula on a local workstation, is it recommended
to go for a higher processor speed/number of cores, or a larger cache size
for the processor (Intel Xeon W series). Or is it likely to be a more
complex interplay
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Dear Bruce,
This is the command I ran with my own data:
recon-all -subjid 00_0086 -i RAW/00_0086/ns_00_0086_3T_T1w_MPR1.nii -i
RAW/00_0086/ns_00_0086_3T_T1w_MPR2.nii
The whole output can be found in the recon-all.log attached below
On Wed, Nov 13,
Hi Dalton
you need to give us a lot more information. What command did you run?
What was the full output?
cheers
Bruce
On Wed, 13 Nov 2019, Dalton Bermudez wrote:
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-- Forwarded message -
From: Dalton Bermudez
Date: Wed, Nov
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Dear FS experts,
Is it necessary to do spatial smoothing for cortical folding measures
(curv/sulc/smoothwm.FI.crv/pial_lgi, etc.)? These cortical folding measures are
inherently smooth based on the computation methods used. If spatial smoothing
is
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Dear Freesurfer experts,
I am trying to use ADNI MERGE R package to get 'wholebrain' volume.
It requires CerebralCortex. The information I get from ADNI merge
is "Volume (WM Parcellation) of RightCerebralCortex".
But when I ran Freesurfer reconall
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Dear freesurfer experts,we want to analyze the relationship between the
cortical thickness and the neuropsychology regressing out the effects of
gender and age, but I don't know how to make the design matrix? Is it [0.5 -0.5
0.5 -0.5 0 0 0 0 1 -1 1
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