--o
CerebellumGrayMatterMaskEroded_gtmseg.mgz --match 8 47 --erode 2
Thank you,
Sneha
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Douglas N. Greve
Sent: Friday, August 23, 2024 6:25 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [EXTERNAL] Re: [Freesurfer] petsurfer questions - No PVC stats file in
the simi
looks like it is only different in the first or second decimal place, is
that right? If so, then it is acceptable.
On 8/22/2024 4:11 PM, Sneha Pandya wrote:
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Dear team,
A] I am running mri_gtmpvc on our data and need to extract stats data
that is in the s
On 7/24/2020 10:27 AM, Ferraro, Pilar wrote:
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>
> Hi Douglas,
>
> All the analyses have been run with FS version 6 indeed.
> If you confirm the commands below are correct, I therefore assume I should
> rerun all the analyses using FS 7.1.
>
> I just have fe
On 7/20/2020 2:56 AM, Ferraro, Pilar wrote:
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Many thanks for the reply,
Yep, unfortunately MG values are always much higher than SGTM ones (in
all the ROIs).
I wonder whether this might be related (for MG and MZ) to the absence
of a normalization using t
On 4/14/2020 5:40 AM, Ferraro, Pilar wrote:
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Dear Freesurfer experts,
We are conducting a PETSurfer analysis, and have some questions on the
best way to proceed. Briefly, this is what we have done:
After running the standard Freesurfer analysis an all
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Dear Freesurfer experts,
We are conducting a PETSurfer analysis, and have some questions on the best way
to proceed. Briefly, this is what we have done:
After running the standard Freesurfer analysis an all the T1 images, we have
generated the segm
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Thank you Dr.Greve.
I applied to rbv.nii.gz volume to anatomical space.
You said, bbpet2anat.lta. using mri_vol2vol
but I tested. registration using bbpet2anat.lta was not correct on native
T1 space.
So I tested rbv2anat.lta for registration. that w
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*Thank you Dr. Greve for your answer*
I checked all about your comment.
I have questions more.
1. I found that volumes or counts in gtm.stats.dat are for native PET
space. If co-registered PET onto corresponding MRI(i.e. MRI space) is available
usin
On 2/9/2020 10:19 PM, Soo-Jong Kim wrote:
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Thank you, Dr. Greve
I checked all about your comment.
I have questions more.
1. I found that volumes or counts in gtm.stats.dat are for native PET
space.
If co-registered PET onto corresponding MRI(i.e. MRI spa
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Thank you, Dr. Greve
I checked all about your comment.
I have questions more.
1. I found that volumes or counts in gtm.stats.dat are for native PET space.
If co-registered PET onto corresponding MRI(i.e. MRI space) is available
using rbv.nii.gz from m
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Thank you, Dr. Greve
I checked all about your comment.
I have questions more.
1. I found that volumes or counts in gtm.stats.dat are for native PET space.
If co-registered PET onto corresponding MRI(i.e. MRI space) is available
using rbv.nii.gz from m
On 2/3/2020 11:56 PM, Soo-Jong Kim wrote:
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Thank you, Dr. Greve
I checked all about your comment.
I have questions more.
1. I found that volumes or counts in gtm.stats.dat are for native PET
space.
If co-registered PET onto corresponding MRI(i.e. MRI spa
External Email - Use Caution
Thank you, Dr. Greve
I checked all about your comment.
I have questions more.
1. I found that volumes or counts in gtm.stats.dat are for native PET space.
If co-registered PET onto corresponding MRI(i.e. MRI space) is available
using rbv.nii.gz from m
On 1/30/2020 3:39 AM, Soo-Jong Kim wrote:
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I ran gtmseg for my partial volume correction
1. but I have a question. What regions are for the detail??
in this option.
mri_gtmpvc --default-seg-merge.
I searched mri_gtmpvc --help
but it is default schema for
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I ran gtmseg for my partial volume correction
1. but I have a question. What regions are for the detail??
in this option.
mri_gtmpvc --default-seg-merge.
I searched mri_gtmpvc --help
but it is default schema for merging ROIs.
So I wanna know what reg
what ligand are you using? Do you expect it to be higher in GM and in WM? What
are the values in the gtm.stats file relative to when you run it without PVC?
How did you choose 5 as the --psf?
On 11/26/2019 2:53 AM, Soo-Jong Kim wrote:
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Dear FreeSurfer expert
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