Hi,
We are getting multiple requests for this but did not have the
bandwidth to do it. So if you are planning to implement - share
through the toolshed and we will roll it to main.
The way I got round this was let the SRA website do the conversion. So just
paste in the URL in the upload
On Mon, Apr 4, 2011 at 12:19 PM, Peter Cock p.j.a.c...@googlemail.com wrote:
On Fri, Apr 1, 2011 at 12:01 PM, Peter Cock p.j.a.c...@googlemail.com wrote:
On Thu, Mar 31, 2011 at 6:28 PM, Peter Cock p.j.a.c...@googlemail.com
wrote:
Hi all,
The NCBI have just released BLAST 2.2.25+ which
On Mon, Apr 4, 2011 at 4:03 PM, Kanwei Li kan...@gmail.com wrote:
I tried both ways, no dice (you can try yourself with a clean
galaxy-central base)
I'm a bit puzzled and not an hg expert. Was there an error message?
And for plan (B), what went wrong with using patch and the raw
changes?
Hi Daniel,
I have attached a patch that does this below. You can use it by
setting param type=password However the security is lacking as you
can see the string when you try to re-run the job and view source. Is
this sufficient for your purposes?
Thanks,
K
On Sat, Apr 2, 2011 at 11:01 AM,
This fix got me further, however I'm now getting the following error, which is
now more confusing...
[bam_sort_core] merging from 40 files...
BGZF ERROR: unable to open file 1.0
BGZF ERROR: unable to open file 1.0
Could not open input BAM files
Juan
On Apr 1, 2011, at 1:53 PM, Dannon Baker
Hi,
We have a local mirror of the galaxy system and the disk is occupied really
quickly. Is there a way to purge histories/datasets not accessed/updated for
a certain period of time, no matter if they are deleted by the user? It looks
like the current scripts for clean up only purges
On Mon, Apr 4, 2011 at 4:36 PM, Kanwei Li kan...@gmail.com wrote:
dhcp243253:galaxy-central kanwei$ hg transplant -s
~/peter/galaxy-central/ -b blast25
searching for changes
changeset: 5585:ab40f95393ec
branch: blast25
parent: 5583:086c9c2c52b9
user: peterjc
Done the manual way
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Daniel,
Note that this (and similar) password solutions in Galaxy is not secure in any
real way (especially if you're dealing with patient data or HIPPA):
The password (hidden or visible in a text field) is still transmitted in
clear-text over the network (unless you're using HTTPS/SSL).
If
More bug fixes, and a paired-end TopHat tool.
Available here:
http://cancan.cshl.edu/labmembers/gordon/files/cshl_rnaseq_2011_04_04.tar.bz2
See the interface here:
http://cancan.cshl.edu/publicgalaxy/root?tool_id=cshl_tophat_pe1
Comments are very welcomed,
Cufflinks is next,
-gordon
Assaf
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