Re: [galaxy-dev] approximate line numbers shown in history items can be very imprecise

2011-07-31 Thread Dannon Baker
Chaolin, You guessed correctly as to why we implemented this, getting exact line counts on very large files is a time consuming process. You can still get an exact line count using the Line/Word/Character count tool in the Text Manipulation section. If you're interested in the way it

Re: [galaxy-dev] approximate line numbers shown in history items can be very imprecise

2011-07-31 Thread Chaolin Zhang
Hi Dannon, Thanks for the information. Yes, I know the line number tool, but running this for each file a user is interested in getting a line number is a pain (and confusing because the history items double), because in our case (probably not rare for real analysis tasks), this information

Re: [galaxy-dev] approximate line numbers shown in history items can be very imprecise

2011-07-31 Thread Chaolin Zhang
Hi Dannon, We do have a local mirror here. How to disable the estimation? Thanks! Chaolin On Jul 31, 2011, at 11:38 AM, Dannon Baker wrote: Chaolin, You guessed correctly as to why we implemented this, getting exact line counts on very large files is a time consuming process. You can

Re: [galaxy-dev] Does Galaxy have a tool to run R script?

2011-07-31 Thread Bossers, Alex
You can also directly link the R script in the galaxy-tool. We have many of those. For testing (NOT SAFE!) we also have a tool that allows the upload of an R script for testing purposes See the arhives for more extensive discussion... command R --slave --vanilla