Hello,
Just want to clarify two questions:
1) Is there a way to get the absolute path of a dataset directly from the
interface? This is sometimes useful to create a local directory of all required
files (by using symlink) if we know the full path.
2) How do we create a data library from
Derar all,
I have recently moved from galaxy-central to galaxy-dist and all seems
to work fine except that everytime I start a new session (ie: I go to my
galaxy with my browser), I get the error below. I just need to reload
the page and all is fine again.
I would mention that while the whole
On Apr 9, 2012, at 3:04 AM, Praveen Raj Somarajan wrote:
Hello,
Just want to clarify two questions:
1) Is there a way to get the absolute path of a dataset directly from the
interface? This is sometimes useful to create a local directory of all
required files (by using symlink) if we
On Apr 6, 2012, at 2:31 PM, Robert Chase wrote:
Hello,
On our test instance of galaxy we have set up filesharing with the rest of
our cluster. We have also setup LDAP authentication on the server.
We are having problems getting data from the tools based on data_source.py.
For instance,
On Mar 30, 2012, at 5:53 AM, Alban Lermine wrote:
Hi,
It seems that PYTHONPATH isn't set when galaxy start.. (according to
http://osdir.com/ml/galaxy-development-source-control/2011-11/msg00035.html)
Should I search this way ?
Hi Alban,
Galaxy should be setting PYTHONPATH itself, it's
I recently ran into a problem where the tool-dependency env.sh file was
not getting sourced for a particular tool. I realized that the problem
was in how the tool 'requirement' tag was specified.
The requirement tag was specified as in the Tool Config Syntax
documentation
Is there a reason that the samtools BAM to SAM does not respect the
new_file_path set in the config file? The tmp directory handling by
different tool wrappers seems to be an issue right now on systems with
small system tmp directories.
--
Matt Shirley
Ph.D Candidate - BCMB
Pevsner Lab
I am testing galaxy for wide use, and I have legacy text files that call
algorithms, sorts, and displays. One such has a tool.xml file with 10
parameters, one select, three integer, and one float, with the rest text
for the moment. (some will be type=data later if the runs equate to the
runs we
Hello,
I am going to forward your question over to the galaxy-...@bx.psu.edu
mailing list so that it can get more visibility in the development
community. That list is probably where you will want to post regarding
similar topics in the future:
http://wiki.g2.bx.psu.edu/Support#Mailing_Lists
