Dear list,
I have tried to use cloudman on ubuntu 12.04 (with mi-deployment
scripts). It didn't run very smooth. One of the issues seems to be that
SGE depends on libc.so.6, which is not in the location where cloudman
expects it.
If not fixed yet, I'll create a pull request for the fix (two
Hi,
I am trying to set up Galaxy with an IdP. Yet, after the autentication,
the SAML data coming via POST method to the WSGI (Galaxy) dissappears. I
can only see it in a Firefox add-on, scrolling, but there is no way I
can get hold of it in order to validate the users.
Any idea how one can
On May 10, 2012, at 11:34 PM, Ciara Ledero wrote:
Hi all,
I would just like to ask if it's possible to create a new folder (via script)
in the galaxy-dist folder.
Hi Ciara,
If you mean a new Data Library folder, then yes, via the API. If you mean a
new subdirectory on the filesystem in
On May 10, 2012, at 4:23 PM, CHEBBI Mohamed Amine wrote:
Hi Galaxy team ;
I'am trying to put Galaxy into a production environment behind apache2 :
I followed the tuto in http://wiki.g2.bx.psu.edu/Admin/Config/Apache%20Proxy
for putting galaxy behind apache2 so I installed all the modules
Thanks Nate for your prompt response.
Here is what I tried.
Got the jobid (e.g. 02b1cfb59f716d61) from the file download link (could not
find the display URL as you described).
Then tried to use the helper script but got the following error:
python ./helper.py -d 02b1cfb59f716d61
Traceback
On May 11, 2012, at 4:05 PM, Kelkar, Hemant wrote:
Thanks Nate for your prompt response.
Here is what I tried.
Got the jobid (e.g. 02b1cfb59f716d61) from the file download link (could not
find the display URL as you described).
Then tried to use the helper script but got the
No I did not execute it on the galaxy server. I do not have shell access to
the blade that actually runs the galaxy server.
So I would need to get my sys admin to run this then?
That's pretty odd, you're executing this on the Galaxy server? What happens
if you run fetch_eggs.py in the same
On May 11, 2012, at 4:18 PM, Kelkar, Hemant wrote:
No I did not execute it on the galaxy server. I do not have shell access to
the blade that actually runs the galaxy server.
So I would need to get my sys admin to run this then?
Not necessarily, as long as you are running it as the same
No I was not running it as user galaxy (was running it as me). I suppose I
will have to request our sys administrator to run the command.
So in general this would not be an end-user user accessible solution (easily)
for us.
We will try changing the output_collection_parameter as you had
Dear Galaxy Community,
The May 11, 2012 Galaxy Distribution has been released at:
http://bitbucket.org/galaxy/galaxy-dist/
Complete News Brief http://wiki.g2.bx.psu.edu/DevNewsBriefs/2012_05_11
*Highlights:*
* *EMBOSS* tools and datatypes have now moved from the _/Galaxy
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