Hi Nate,
thanks for your reply. My solution will break down in such a case, indeed. So
here is what I need/have:
I have a tool which allows the user to select a specific workflow and
appropriate input data from his/her
history. On execution a script is used to do several preprocessing st
Hi John,
On Wed, Aug 15, 2012 at 7:32 PM, John Patterson wrote:
> On 08/15/2012 08:59 PM, Dan Tenenbaum wrote:
>
> Hi all,
>
> I'm trying to wrap my head around what the tag does...it
> looks like it doesn't do what I would like.
>
> I want to create a tool that allows the user to upload a data
On 08/15/2012 08:59 PM, Dan Tenenbaum wrote:
Hi all,
I'm trying to wrap my head around what the tag does...it
looks like it doesn't do what I would like.
I want to create a tool that allows the user to upload a data file and
then have it run through one or more filters. Each filter takes one o
Hi all,
I'm trying to wrap my head around what the tag does...it
looks like it doesn't do what I would like.
I want to create a tool that allows the user to upload a data file and
then have it run through one or more filters. Each filter takes one or
more parameters.
I was thinking I could do s
> When I zoom in the point where 20kb is displayed on screen I get large blocks
> of the track separated by empty gaps. When I zoom in to these gaps there is
> definitely track signal there. Is this a bug or is this intended to limit the
> amount of data to load?
Long-standing bug. I've fixed i
Hi dev,
We have a script that download a number of files from an external
site, however, only the first file shows up in the user history once
the downloads are complete. The rest of the files show up when we
click on the refresh user history button. Is there a way to refresh
the user history i
Hi Suzan,
Just to double check - for this value
> Username: My galaxy Username
You are entering your email address, correct? Not the user name that
shows up on Pages, etc. Galaxy credentials are email & password for FTP.
It doesn't look like you are using SFTP, which would be a problem, but
On Aug 15, 2012, at 10:08 AM, Sascha Kastens wrote:
> Hi again!
> I was able to implement a quite dirty solution:
>
> first I edited /lib/galaxy/model/mapping.py and extended
>
> assign_mapper( context, User, User.table,
> properties=dict( histories=relation( History, backref="user",
>
I am looking at bigwig files in trackster.
When I zoom in the point where 20kb is displayed on screen I get large
blocks of the track separated by empty gaps. When I zoom in to these
gaps there is definitely track signal there. Is this a bug or is this
intended to limit the amount of data
Hello,
Is there a way to annotate the notes of a custom tool to include
information about the parameters passed to the tool? Let us say a user
specifies a number n as a parameter to the tool. Is it possible to put this
parameter in the notes that appear when the pencil icon is pressed?
Reading th
Hi again!
I was able to implement a quite dirty solution:
first I edited /lib/galaxy/model/mapping.py and extended
assign_mapper( context, User, User.table,
properties=dict( histories=relation( History, backref="user",
order_by=desc(History.t
Hi, not sure if this has been reported yet.
If I use the dataset icon to view in trackster then select view in
saved visualisation, the saved visualisations pop up momentarily then
the window closes.
I've tested this on the main galaxy site and my own instance on Chrome
and Firefox.
Th
Hi Greg,
That is great, I`ll give it a try.
Thank a lot,
Marc
From: Greg Von Kuster [g...@bx.psu.edu]
Sent: Tuesday, August 14, 2012 10:38 PM
To: Marc Logghe
Cc: Björn Grüning; galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Upload File: how to see all
Hi Jenny
Do you actually get an error message? like: "tool not found"
First, try to find out what is actually not working in your script by
adding some debugging comments (eg: print "wc run correctly"; etc)
Next, just to get it working, provide the full path for each tool in the
system com
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