On 10/01/2013 07:12 PM, Cole, Nathan (NIH/NCI) [C] wrote:
One final question as I dive into looking at these two methods: can you expose whole
hierarchies and directories using the from_file method or will this only work
on an individual sample basis?
yes, you can.
as an example have a
Hi!
I am trying to launch Galaxy locally but I'm getting the following error:
tkx417:galaxy pascarellagiovanni$ sh run.sh
Traceback (most recent call last):
File ./scripts/paster.py, line 33, in module
serve.run()
File
This looks to be a bug with the version of babel we're using (fixed in a
newer revision that I'll update to after testing), combined with improperly
set environment variables. Can you check your environment (just `env` in a
terminal) and look for LC_ALL, LANGUAGE, and LANG. Are any of these set
One final question as I dive into looking at these two methods: can you expose
whole hierarchies and directories using the from_file method or will this
only work on an individual sample basis?
If not, is there any method for exposing a the whole of a directory on the file
system?
Thanks,
I'm having some difficulty collaborating on a tool development in the
toolshed. It seems to happen on the production toolshed as well as the
testtoolshed. When I try to grant another user the ability to update a
repository (or when the other person tries to add me) we get the
following
Dear all
Related to my question yesterday I have another one:
If I run a workflow in batch I can select pairs of files (the old fwd
and rev reads fastq files) and the workflow is run however many times,
depending on the number of pairs I select.
Unfortunately all other parameters appear to be
Hi all,
Multiple users of our internal Galaxy server have reported with
multiple browsers that tabular data is not displayed in the main
central panel. The preview in the history works, but clicking on
the eye icon gives a blank page.
I can confirm this in Firefox 24.0 and Safari 6.0.5, the HTML
It seems like Slice_bam should be pretty straight-forward to use, but when I
run it and give it a bed file that contains the human chromosomes with their
lengths like this:
chr11 249250621
chr21 243199373
for all chromosomes 1-22, X, Y.
I don't get the reads on chr1
Hi Lance,
I worked for me the last time. I usually create a repository under the
IUC account and add me as contributor. No problem so far.
Cheers,
Bjoern
I'm having some difficulty collaborating on a tool development in the
toolshed. It seems to happen on the production toolshed as well as
Perhaps it has something to do with a specific account? The user
'nilesh' tried to add me to his rseqc repository
(http://toolshed.g2.bx.psu.edu/view/nilesh/rseqc ) and got a Server
Error. I then created the rseqc_dev3 repository
(http://testtoolshed.g2.bx.psu.edu/view/lparsons/rseqc_dev3
Hi Peter,
we can confirm. Latest Galaxy stable version and its occurring randomly.
I was not able to reproduce it by myself.
Cheers,
Bjoern
Hi all,
Multiple users of our internal Galaxy server have reported with
multiple browsers that tabular data is not displayed in the main
central
Hi Peter,
Does the Javascript console of the browser show any error messages?
Thanks,
Sam
On Wed, Oct 2, 2013 at 2:48 PM, Björn Grüning
bjoern.gruen...@pharmazie.uni-freiburg.de wrote:
Hi Peter,
we can confirm. Latest Galaxy stable version and its occurring randomly.
I was not able to
Hi,
I added you successfully to:
http://testtoolshed.g2.bx.psu.edu/view/bgruening/precommit_test
please keep in mind that you need to remove the 'select one' button
before you click submit, that is not intuitive but a known bug.
Cheers,
Bjoern
Perhaps it has something to do with a specific
Alper,
Did you problem get resolved already? Maybe on the galaxy-...@bx.psu.edu
mailing list?
I am posting it there in case it is still open. Please reply to let us
know your current status.
Please drop galaxy-u...@bx.psu.edu from the to/cc on reply and future
posts to this thread.
Yes it is solved thanks
Sent from my iPhone
On Oct 2, 2013, at 6:14 PM, Jennifer Jackson j...@bx.psu.edu wrote:
Alper,
Did you problem get resolved already? Maybe on the galaxy-...@bx.psu.edu
mailing list?
I am posting it there in case it is still open. Please reply to let us know
Hello all,
The 2014 Galaxy Community Conference
(GCC2014)http://wiki.galaxyproject.org/Events/GCC2014 has
been scheduled for June 30 through July 2, at the Homewood
Campushttp://webapps.jhu.edu/jhuniverse/information_about_hopkins/campuses/homewood_campus/
of Johns Hopkins University
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