Hi Nik,
the current wrappers are hosted here:
https://github.com/bgruening/galaxytools/tree/master/gatk2
and maintained by Nicola Soranzo, Jim Johnson and me.
The current plan is to realease a final version of GATK2.8 and start
working on GATK3 after that.
I'm in contact the Geraldine Van der
Hello,
I am working on it; I already integrate some tools of GATK3 in a
dedicated instance of galaxy;
- RealignerTargetCreator
http://www.broadinstitute.org/gatk/gatkdocs/org_broadinstitute_sting_gatk_walkers_indels_RealignerTargetCreator.html
- IndelRealigner
On Mon, May 12, 2014 at 11:40 AM, Peter Cock p.j.a.c...@googlemail.com wrote:
On Wed, May 7, 2014 at 3:01 PM, Peter Cock p.j.a.c...@googlemail.com wrote:
Hi Dave,
Can you tell me any more about this failed tool dependency error:
http://testtoolshed.g2.bx.psu.edu/view/peterjc/mira4_assembler
Hi Greg,
That Trello card link doesn't work for me, but the old domain is
currently not redirecting to the ToolShed.
Regards,
Peter
On Wed, Mar 6, 2013 at 12:32 PM, Greg Von Kuster g...@bx.psu.edu wrote:
Hi Peter,
I've added this to the same Trello card. These URL redirects lie outside of
Hi Evan,
It looks like that message might actually list the two versions backwards.
I'll check into it and, if that's the case, get a fix out shortly.
In any event, you should be able to edit and re-save the workflow as
indicated to keep moving forward.
-Dannon
On Tue, May 20, 2014 at 3:02
Dear all,
I have a tool which generates dynamic number of mzid outputs depending
on the number of selected files and tools ( = number of files * number of
tools). The suggested methods to deal with this situation are 1) composite html
which contains links to all outputs or 2) put output
