[galaxy-dev] Test run frequency on TestToolShed

2014-08-18 Thread Peter Cock
Hi all, Are the main and test tool-sheds currently meant to be running the tool functional tests every 48 hours? I created and updated these repositories last week, but they have yet to be tested: https://testtoolshed.g2.bx.psu.edu/view/peterjc/seq_composition

Re: [galaxy-dev] Test run frequency on TestToolShed

2014-08-18 Thread Peter Cock
On Mon, Aug 18, 2014 at 11:16 AM, Peter Cock p.j.a.c...@googlemail.com wrote: Hi all, Are the main and test tool-sheds currently meant to be running the tool functional tests every 48 hours? I created and updated these repositories last week, but they have yet to be tested:

Re: [galaxy-dev] Upload file not working with new install

2014-08-18 Thread John Chilton
I have not seen this before - are you able to submit things as your Galaxy user from the command line? Are their logs on the PBS side that give any more clues? -John On Fri, Aug 15, 2014 at 2:01 PM, Iry Witham iry.wit...@jax.org wrote: Hi John, It looks like it may be related to PBS

Re: [galaxy-dev] Test run frequency on TestToolShed

2014-08-18 Thread Dave Bouvier
Peter, The tests are configured to run once every 48 hours, on even-numbered days of the month. I'll be looking into the three you mentioned in your second email to determine why they are not being tested, or why the test results are not being updated. --Dave B. On 08/18/2014 07:28 AM, Peter

Re: [galaxy-dev] Test run frequency on TestToolShed

2014-08-18 Thread Saket Choudhary
Dave, I have similar issues with my repositories: https://testtoolshed.g2.bx.psu.edu/view/saketkc/pycurl_test This was uploaded on 14th August. https://testtoolshed.g2.bx.psu.edu/view/saketkc/package_pycurl_7_19_3_1 shows no test results for the month of August. The last test was run on

Re: [galaxy-dev] Upload file not working with new install

2014-08-18 Thread Iry Witham
Hi Nate, We were able to get upgraded to pbs-python 4.4.0 after having to modify some c++ code that was causing errors with the _py.so. We now have it running, but I am trying to get the references to work for the tools I have installed from the tool shed. They can't seem to find the correct