Re: [galaxy-dev] Displayed versions of tools in Galaxy

2012-12-11 Thread Ivan Lovric
This has been confusing for me also. Perhaps if we had a way to distinguish between the two by prefixing the tool version of a wrapper with w0.0.5 and the actual tool version with v1.3.0? I think that Galaxy determines the versions of the tools it loads at startup in lib/galaxy/tools/__init__.py

[galaxy-dev] status of deseq tool from main toolshed

2012-12-02 Thread Ivan Lovric
Hi guys, Following the instructions in the README.md file from the successful installation of the tool, I copied deseq.R to tool-data/ I've been trying to get the deseq_and_sam2counts tool on our local galaxy-dist here: http://toolshed.g2.bx.psu.edu/repos/nikhil-joshi/deseq_and_sam2counts I note

Re: [galaxy-dev] Tool shed empty

2012-09-04 Thread Ivan Lovric
Ahh.. Just realized that the installation to local galaxy is done from the web runner interface...under search and browse toolsheds...forgotten about that one! :) On Tue, Sep 4, 2012 at 2:13 PM, Ivan Lovric i...@genome.edu.au wrote: Hi there, I've been having some trouble with the Tool Shed

[galaxy-dev] Tool shed empty

2012-09-03 Thread Ivan Lovric
Hi there, I've been having some trouble with the Tool Shed recently. This image from the ToolShed wiki http://wiki.g2.bx.psu.edu/Tool%20Shed?action=AttachFiledo=gettarget=user_register.png Suggests that there is a Browse all repositories link on the side panel in the non-admin interface, however