Re: [galaxy-dev] repeat tag enhancement?

2014-07-04 Thread Keilwagen, Jens
Hi John, thanks for your email and the links. Sorry, I missed the data set collection before. This is really an brilliant feature. In the morning, we tested it and we believe it will be very useful for us. However, we are waiting for further features for the data set collections (view,

Re: [galaxy-dev] repeat tag enhancement?

2014-07-02 Thread Keilwagen, Jens
Here is the link to the original post/thread: http://dev.list.galaxyproject.org/repeat-tag-enhancement-tt4660660.html ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and

Re: [galaxy-dev] Running a different command based on selection in the tool

2014-03-19 Thread Keilwagen, Jens
Hi Saba, there is a syntax error in the line of the #if. Please add : at the end and report whether the error still occurs. All the best, Jens Von: galaxy-dev-boun...@lists.bx.psu.edu [mailto:galaxy-dev-boun...@lists.bx.psu.edu] Im Auftrag von Saba Sehrish Gesendet: Mittwoch, 19. März 2014

[galaxy-dev] cap3 in galaxy

2014-02-12 Thread Keilwagen, Jens
Hi, I was pointed to CAP3 by a colleague who likes to have it included in our local Galaxy instance. Searching for cap3 in the Galaxy repositories I only found the packages package_cap3_3 provided by jjohnson:

Re: [galaxy-dev] workflow: default parameters

2013-07-24 Thread Keilwagen, Jens
James Taylor Gesendet: Montag, 22. Juli 2013 19:28 An: Keilwagen, Jens Cc: galaxy-...@bx.psu.edu Betreff: Re: [galaxy-dev] workflow: default parameters Not currently possible, but it shouldn't be too difficult to make work. Please file a Trello card. On Tue, Jul 9, 2013 at 11:36 AM

[galaxy-dev] allow users for specifying the number of CPUs

2013-07-09 Thread Keilwagen, Jens
Hi guys, we are currently trying to integrate CLC Bios short read assembler into our local Galaxy version. So far everything went smoothly. However, the command line tool allows for specifying the number of CPU that should be used for computation. We are wondering, whether it is also possible

[galaxy-dev] workflow: default parameters

2013-07-09 Thread Keilwagen, Jens
Hi guys, when building workflows we can choose for each parameter whether to 'set at runtime' or to 'set in advance' (when creating or editing the workflow). We are looking for a possiblity to set a default value that is used (only) for the workflow, i.e., we like to specify a value that might

[galaxy-dev] dynamically load and run R scripts

2013-06-17 Thread Keilwagen, Jens
Hi guys, I was searching for a possiblity to dynamically load and run R scripts and I found http://dev.list.galaxyproject.org/dynamic-loading-of-tools-tt4138600.html I know that it might be a security issue, but we only have a local instance here. Optimally an R script can be loaded into the

Re: [galaxy-dev] Internal Server Error during installation of ncbi_blast_plus

2013-06-05 Thread Keilwagen, Jens
a while, but it works. Thank you very much. All the best, Jens -Ursprüngliche Nachricht- Von: Greg Von Kuster [mailto:g...@bx.psu.edu] Gesendet: Dienstag, 4. Juni 2013 15:58 An: Keilwagen, Jens Cc: Galaxy Dev Betreff: Re: AW: [galaxy-dev] Internal Server Error during installation

Re: [galaxy-dev] Internal Server Error during installation of ncbi_blast_plus

2013-06-04 Thread Keilwagen, Jens
| +++---+--++-+---+---+ Does this help? Best regards, Jens -Ursprüngliche Nachricht- Von: Greg Von Kuster [mailto:g...@bx.psu.edu] Gesendet: Dienstag, 4. Juni 2013 15:29 An: Keilwagen, Jens Cc: Galaxy Dev Betreff: Re: [galaxy-dev] Internal Server

Re: [galaxy-dev] Internal Server Error during installation of ncbi_blast_plus

2013-05-31 Thread Keilwagen, Jens
:39 An: Keilwagen, Jens Cc: Galaxy Dev Betreff: Re: AW: [galaxy-dev] Internal Server Error during installation of ncbi_blast_plus Hello Jens, It looks like your Galaxy instance is fairly old. What version of Galaxy are you running? Thanks, Greg Von Kuster On May 30, 2013, at 1:49 AM

Re: [galaxy-dev] Internal Server Error during installation of ncbi_blast_plus

2013-05-30 Thread Keilwagen, Jens
Nachricht- Von: Greg Von Kuster [mailto:g...@bx.psu.edu] Gesendet: Mittwoch, 29. Mai 2013 16:45 An: Keilwagen, Jens Cc: Galaxy Dev Betreff: Re: [galaxy-dev] Internal Server Error during installation of ncbi_blast_plus Hello Jens, What does your Galaxy paster log show that is related

Re: [galaxy-dev] Internal Server Error during installation of ncbi_blast_plus

2013-05-30 Thread Keilwagen, Jens
Hi Peter, thanks for your email. Regarding you questions The Galaxy team should be able to ask some more targeted questions, but how far did the process get? I get this errorimmediately after clicking on Install to Galaxy. Were you asked about the dependencies (e.g. the

[galaxy-dev] user-specific tool panel

2013-03-22 Thread Keilwagen, Jens
Hi guys, I'm wondering whether it is possible to have user-specific tool panels after logging in. This way users could customize the tool panel for instance by increasing the visibility of their (user-specific) favorites ... This would be a wonderful feature. However searching in the