Follow the Galaxy wiki
https://wiki.galaxyproject.org/Admin/Config/Performance/Cluster#Submitting_Jobs_as_the_Real_User
setup permission instructions.
Follow these 2 steps to get Galaxy to run as real users with IBM Platform
LSF:
Step 1) Download the latest LSF DRMAA 1.1.1 from github.
Hi.
Getting error when trying to install the latest Galaxy on a new stand alone
linux RH server. Is the repository down?
migrate.versioning.repository DEBUG 2013-07-16 14:14:46,235 Config:
{'db_settings': {'__name__': 'db_settings', 'required_dbs': '[]',
'version_table': 'migrate_tools',
Hi.
Running standalone Galaxy stable_2013.06.03 version on RH6.2 with postgresl
db with GPFS filesystem.
Setup via the directions in
http://wiki.galaxyproject.org/Admin/Config/Performance/Cluster
to run all jobs through the LSF DRMAA runner.
job_conf.xml:
job_conf
Thanks Dannon.
I am going with postgres for now while mysql is being fixed.
Regards,
Linda
From: Dannon Baker dannon.ba...@gmail.com
To: Linda Cham/Poughkeepsie/IBM@IBMUS
Cc: Björn Grüning bjoern.gruen...@pharmazie.uni-freiburg.de,
Galaxy Dev galaxy-dev@lists.bx.psu.edu
Thank you Jeremy.
The new wiki page looks great!
Regards,
Linda
From: Jeremy Goecks jeremy.goe...@emory.edu
To: Linda Cham/Poughkeepsie/IBM@IBMUS
Cc: galaxy-dev@lists.bx.psu.edu
Date: 06/11/2013 12:56 PM
Subject:Re: [galaxy-dev] Trackster set display mode - Output looks
Hi Sridhar,
About the error, you need to request a key from GATK
http://gatkforums.broadinstitute.org/discussion/1250/what-is-phone-home-and-how-does-it-affect-me#latest
See under How to obtain and use a GATK key
Or by pass it by removing the -et NO_ET line from the xml files.
From:
Hi. I am new to the Galaxy forum and I am trying to setup a new local
Galaxy instance with MySQL on RH6.2 x86_64.
On a newly installed OS node, using the hg clone command (hg clone
https://bitbucket.org/galaxy/galaxy-dist#stable) which gets the current
Galaxy 20130603 image, I am getting the
environment to see if I can reproduce the mysql issue now, and
will let you know what I come up with.
Thanks!
-Dannon
On Wed, Jun 5, 2013 at 11:12 AM, Linda Cham lc...@us.ibm.com wrote:
Hi. I am new to the Galaxy forum and I am trying to setup a new local
Galaxy instance with MySQL on RH6.2 x86_64
:17:31 2013 -0400
summary: Update tag for stable_2013.06.03
script/manage_db.py still the same as above.
From: Björn Grüning bjoern.gruen...@pharmazie.uni-freiburg.de
To: Linda Cham/Poughkeepsie/IBM@IBMUS
Cc: Dannon Baker dannon.ba...@gmail.com, Galaxy Dev
galaxy-dev
