}
done
myTool -i $file_without_extension
This works perfectly !
Thank you Ross for your attention, your help was precious !
Marine
De : Ross ross.laza...@gmail.com
À : Marine Rohmer marine.roh...@yahoo.fr
Cc : galaxy-dev@lists.bx.psu.edu galaxy-dev
file.
So is there any specified thing to do to recover the component files of a
composite file ?
Best regards,
Marine
De : Ross ross.laza...@gmail.com
À : Marine Rohmer marine.roh...@yahoo.fr
Envoyé le : Mercredi 13 juin 2012 10h50
Objet : Re: [galaxy
the tool on
Galaxy...
Maybe I just miss a little thing, or I'm on a wrong way...?
De : Ross ross.laza...@gmail.com
À : Marine Rohmer marine.roh...@yahoo.fr
Cc : galaxy-dev@lists.bx.psu.edu galaxy-dev@lists.bx.psu.edu
Envoyé le : Vendredi 15 juin 2012 12h40
Objet
De : Ross ross.laza...@gmail.com
À : Marine Rohmer marine.roh...@yahoo.fr
Cc : galaxy-dev@lists.bx.psu.edu galaxy-dev@lists.bx.psu.edu
Envoyé le : Vendredi 15 juin 2012 12h40
Objet : Re: Re : Composite output with self-declarated datatypes
Hi Marine,
Other people
datatype appears well in file format from Get Data's upload file
section, but when I run my tool, I have 2 outputs which are the components of
my primary datatype, instead of only one output.
Best regards,
Marine
De : Marine Rohmer marine.roh...@yahoo.fr
À
Hi everyone,
I'm trying to add a tool which generates 2 files, that I will call .xxx (a
text file) and .yyy (a binary file) . Both files are needed to use the
result of my tool with an other tool I've added.
So I wanted to create a composite datatype , that I will call .composite,
whose
Hi everyone,
I'm trying with all my best to add an NGS tool into my local Galaxy instance.
I've added my tool in tool_conf.xml, and made a XML file with all the
command, param etc... I think it's pretty ok, and everything is correctly
displayed on the Galaxy interface.
However, when I
on
${database.value_label} /
/outputs
tests
test
/test
/tests
help
/help
/tool
/tool
Regards,
Marine
De : Hans-Rudolf Hotz h...@fmi.ch
À : Marine Rohmer marine.roh...@yahoo.fr
Cc : galaxy-dev@lists.bx.psu.edu galaxy-dev
: Hans-Rudolf Hotz h...@fmi.ch
À : Marine Rohmer marine.roh...@yahoo.fr
Cc : galaxy-dev@lists.bx.psu.edu galaxy-dev@lists.bx.psu.edu
Envoyé le : Mercredi 30 mai 2012 14h22
Objet : Re: Re : [galaxy-dev] Error executing tool: cannot find 'database'
Hi Marine
In addition to Ross' comment earlier
