Re: [galaxy-dev] Adding mm10 to available genomes

2012-06-11 Thread Hans-Rudolf Hotz
Hi Larry Have you added mm10 Mouse Dec. 2011 (GRCm38/mm10) (mm10) to ~/galaxy_dist/tool-data/shared/ucsc/builds.txt and restarted the server? Regards, Hans On 06/08/2012 06:19 PM, Larry Helseth wrote: I'm trying to add mm10 to a Galaxy instance built using Mercurial on May 31st

Re: [galaxy-dev] Adding mm10 to available genomes

2012-06-11 Thread Larry Helseth
Thanks! That worked. On Mon, Jun 11, 2012 at 2:41 AM, Hans-Rudolf Hotz h...@fmi.ch wrote: Hi Larry Have you added mm10Mouse Dec. 2011 (GRCm38/mm10) (mm10) to ~/galaxy_dist/tool-data/**shared/ucsc/builds.txt and restarted the server? Regards, Hans On 06/08/2012 06:19 PM,

[galaxy-dev] Adding mm10 to available genomes

2012-06-08 Thread Larry Helseth
I'm trying to add mm10 to a Galaxy instance built using Mercurial on May 31st (using Postgres). I've added the .fa file, prepared bwa, bowtie, samtool indexes, etc., edited all of the .loc files for individual tools and restarted the server daemon. mm10 appears in the list of genomes available