So I tryed an other way to access the value :
${clean_pairends.clean_pairends_select} == "y"
but it's not working either ... I tryed to add a label to the data like
this :
label="${clean_pairends.clean_pairends_select}">
${clean_pairends.clean_pairend
Thanks for the answer,
Still considering the number of outputed files problem. In my script I
know that if
a cleaning option is set 2 other files will be created, so I check if
the option is asked by the
user and try this :
#if $clean_pairends.clean_pairends_select=="y":
#
Thanks for the answer,
so I tryed to write a wrapper, but the main script is not recognize.
When I'm calling my wrapper in the xml file, I don't have to specify
the full path but then from my wrapper if I want to call my main script
I can't if this one is not on the PATH ? the wrapper current di
I can only see the usage of the tag into the
to change format, is that correct ?
I tryed :
format="interval"/>
but even if the option is not selected, I have 2 outputs !
Am I missing something with the tag ? Because it looks to me
that it is pretty limited t
Thanks this is what I was looking for !!
I succeded to make it work when checking the value on a simple param
using the name like this
label="Quality reads file (if input is a fasta)" />
...
qual_file != None
however when I'm in a conditional tag like this, I tryed :
On Tue, Jun 7, 2011 at 11:38 AM, Mariette wrote:
>
> I can only see the usage of the tag into the
> to change format, is that correct ?
>
On re-reading the wiki page, yes, I think you are right. I should have
said with , as in tools/filters/sff_extractor.xml
Peter
On Tue, Jun 7, 2011 at 10:56 AM, Mariette wrote:
>
> Thanks for the answer,
> Still considering the number of outputed files problem. In my script I know
> that if
> a cleaning option is set 2 other files will be created, so I check if the
> option is asked by the
> user and try this :
>
>
>
On Tue, Jun 7, 2011 at 9:24 AM, Mariette wrote:
>
> Thanks for the answer,
>
> so I tryed to write a wrapper, but the main script is not recognize.
> When I'm calling my wrapper in the xml file, I don't have to specify
> the full path but then from my wrapper if I want to call my main script
> I c
On Mon, Jun 6, 2011 at 2:45 PM, Mariette wrote:
> Hi everyone,
>
> I'm new in galaxy and I want to create a component, so I have multiple
> questions.
> The component executes a script which takes different formats :
> fasta|fastq|sff. As output it takes a folder, to do so I used the
> extra_files
Hi everyone,
I'm new in galaxy and I want to create a component, so I have multiple
questions.
The component executes a script which takes different formats :
fasta|fastq|sff. As output it takes a folder, to do so I used the
extra_files_path attribute of an output data
(--out='$output.extra_f
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