Re: [galaxy-dev] Error: Job output not returned from cluster

2012-04-30 Thread Nate Coraor
On Apr 25, 2012, at 8:25 AM, Louise-Amélie Schmitt wrote: Hi, Thanks a lot it actually helped. It is not exactly as straightforward in drmaa.py but somehow I could manage. However, it was not the problem. For some reason, the user needs to write files from the node to

Re: [galaxy-dev] Error: Job output not returned from cluster

2012-04-25 Thread Louise-Amélie Schmitt
Hi, Thanks a lot it actually helped. It is not exactly as straightforward in drmaa.py but somehow I could manage. However, it was not the problem. For some reason, the user needs to write files from the node to job_working_directory/00X// and the latter is not world-writable. I had to

Re: [galaxy-dev] Error: Job output not returned from cluster

2012-04-24 Thread Louise-Amélie Schmitt
am having the same problem when I use condor as the scheduler instead of sge. Cai --- 12年4月23日,周一, Louise-Amélie Schmittlouise-amelie.schm...@embl.de 写道: 发件人: Louise-Amélie Schmittlouise-amelie.schm...@embl.de 主题: [galaxy-dev] Error: Job output not returned from cluster 收件人: galaxy-dev

Re: [galaxy-dev] Error: Job output not returned from cluster

2012-04-24 Thread Alban Lermine
: Job output not returned from cluster 收件人: galaxy-dev@lists.bx.psu.edu 日期: 2012年4月23日,周一,下午5:09 Hello everyone, I'm still trying to set up the job submission as the real user, and I get a mysterious error. The job obviously runs somewhere and when it ends it is in error state and displays

[galaxy-dev] Error: Job output not returned from cluster

2012-04-23 Thread Louise-Amélie Schmitt
Hello everyone, I'm still trying to set up the job submission as the real user, and I get a mysterious error. The job obviously runs somewhere and when it ends it is in error state and displays the following message: Job output not returned from cluster In the Galaxy log I have the