Re: [galaxy-dev] Galaxy Tool Shed:- Uploading tool packages fails with Server Error message

2011-04-19 Thread Vipin TS
Hi Greg, Regarding the tools contained in fml_gff_converter_programs.tar.bz2, the following xml files are not well formed due to the malformed ! -- TODO EDIT HERE tag: fml_gff_converter_programs/galaxy/bed_to_gff3.xml fml_gff_converter_programs/galaxy/gff3_to_bed.xml

[galaxy-dev] Galaxy Tool Shed:- Uploading tool packages fails with Server Error message

2011-04-18 Thread Vipin TS
Dear Galaxy team, I would like to upload a set of converter programs available for Generic Feature Format (GFF). When I tried to upload to Galaxy tool shed using my user name vipin...@tuebingen.mpg.de, it gives me Server error message. I am using a *.bz2 file for uploading. It will be great if

Re: [galaxy-dev] Galaxy Tool Shed:- Uploading tool packages fails with Server Error message

2011-04-18 Thread Jennifer Jackson
Hello Vipin, To confirm, you are following the instructions at: http://community.g2.bx.psu.edu/ - Help - How to upload [..] And using Upload a tool? If the size is large (close to 2G or larger), are you using an http or ftp load? A browser file load will likely fail due to a time-out. Is

Re: [galaxy-dev] Galaxy Tool Shed:- Uploading tool packages fails with Server Error message

2011-04-18 Thread Greg Von Kuster
Hello Vipin, Regarding the tools contained in fml_gff_converter_programs.tar.bz2, the following xml files are not well formed due to the malformed ! -- TODO EDIT HERE tag: fml_gff_converter_programs/galaxy/bed_to_gff3.xml fml_gff_converter_programs/galaxy/gff3_to_bed.xml