Hi there
I updated a tool of mine recently, committed to the local toolshed, did
the update from within the Admin panel and then got this error:
Error - type 'exceptions.AttributeError': 'Tool' object has no
attribute 'citations'
A restart of Galaxy seemed to fix the problem, but since then
Hey Peter,
When you are deleting and reinstalling the tool - can you confirm for
me that you are definitely deleting the tool and not just deactivating
it?
I don't know where to hack around from there - I think repositories
are tracked in the database (tool_shed_repository) table, in
I think your tool has an XML error in it (the in_graph_filename param
is not being closed) - I imagine this would prevent Galaxy from
displaying the tool - cannot say if it is the only error though:
param format=graphml name=in_graph_filename type=data
label=Protein interaction graph
Aha, that's true!
With the XML fixed, the installation dialogue changes, and displays the
Add new tool panel section and subsequent parts of the page.
This would *appear* to come from the check for
includes_tools_for_display_in_tool_panel on line 1620 of
