Hi all,
I'm implementing a tool for our local galaxy instance which has multiple output
datasets.
The number of datasets are determined by the input so I've been following the
instructions at the bottom of this page:
https://wiki.galaxyproject.org/Admin/Tools/Multiple%20Output%20Files.
As I
: [galaxy-dev] Multiple output datasets
Date: Wed, 27 Aug 2014 12:04:46 +0200
Hi all,
I'm implementing a tool for our local galaxy instance which has
multiple output datasets.
The number of datasets are determined by the input so I've been
following the instructions at the bottom of this page
To: galaxy-dev@lists.bx.psu.edu
Date: Wed, 27 Aug 2014 12:22:35 +0200
Subject: Re: [galaxy-dev] Multiple output datasets
It does works for me if I do exactly as described on that page without using
the universe_wsgi.ini option:
- I have the force_history_refresh
- I follow the exact file
of the name is
optional.
Stef
- Original message -
From: Martin Christiansen [1]martinchristianse...@hotmail.com
To: Stef van Lieshout [2]stefvanliesh...@fastmail.fm,
[3]galaxy-dev@lists.bx.psu.edu
[4]galaxy-dev@lists.bx.psu.edu
Subject: RE: [galaxy-dev] Multiple output datasets
: [galaxy-dev] Multiple output datasets
Date: Wed, 27 Aug 2014 14:17:13 +0200
I do not use new_file_path and collect_outputs_from in universe_wsgi.ini
In my tool code I directly save to files to:
$__new_file_path__/primary_id_somename_visible_filetype
As they say on the page:
To use
@lists.bx.psu.edu
Subject: RE: [galaxy-dev] Multiple output datasets
Date: Wed, 27 Aug 2014 14:52:03 +0200
I went back to not using the options in the .ini file, but it
still doesn't work.
How to you specify $__new_file_path__? Or do you just enter the
path in the xml command line?
Martin
: [galaxy-dev] Multiple output datasets
Date: Wed, 27 Aug 2014 15:07:52 +0200
In the example they provide it to the sh tool:
command
example_tool.sh $input1 $output1 $output1.id $__new_file_path__
/command
...so then the 3rd and 4th variables given to example_tool.sh contain the id
...@hotmail.com
To: Stef van Lieshout [2]stefvanliesh...@fastmail.fm,
[3]galaxy-dev@lists.bx.psu.edu
[4]galaxy-dev@lists.bx.psu.edu
Subject: RE: [galaxy-dev] Multiple output datasets
Date: Wed, 27 Aug 2014 16:25:07 +0200
But where are the variables defined then?
Martin
