Hi Jun and John,
we have a repository in the test toolshed that can address these use
cases and much more ... I think ...
http://testtoolshed.g2.bx.psu.edu/view/bgruening/text_processing
Its based on the awesome unix-tools from Assaf Gordon and are mainly
based on gnu core-utils with special pat
We have a pair of tools that do just this we (Jim Johnson and myself)
have developed at MSI that have proven useful in a broad range of
scenarios (these are implemented in Python instead of Perl). I have
attached them if you are interested if using/extending them instead of
building up new ones. I
@lists.bx.psu.edu
Subject: Re: [galaxy-dev] pass regular expression
Hi, Jun.
The inbuilt parameter sanitizer can be controlled - see
http://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax#A.3Csanitizer.3E_tag_set
The sub-tag allows precise control and you can specify eg
string.printable if you want ANY
Hi, Jun.
The inbuilt parameter sanitizer can be controlled - see
http://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax#A.3Csanitizer.3E_tag_set
The sub-tag allows precise control and you can specify eg
string.printable if you want ANY printable character in your parameter
Here's an example
Hi all,
I am trying to develop a tool which allows the user to use regular
expression to only keep the lines matching the given pattern in the output.
There are many special characters, e.g. \ in \d. In the perl script the wrapper
invokes, the regular expression is printed as Xd+ for the r
