Re: [galaxy-dev] patches to bjorn's bismark wrapper

2014-04-08 Thread Björn Grüning
Hi Brad, thanks for your patch. Do you mind to create a pull-request to my github account? https://github.com/bgruening/galaxytools Otherwise, are you ok if I push it and reference you by name? Also, it would be good the make the non-sorting optional. Many of us using the calling program

[galaxy-dev] patches to bjorn's bismark wrapper

2014-04-07 Thread Langhorst, Brad
This patch updates bjorn’s bismark wrapper to work with latest bismark and allows methylation extraction from SAM or BAM files. It no longer sorts the BAM from bismark (to allow methylation extraction to work). bismark_patch.diff Description: bismark_patch.diff Comments/corrections