Re: [galaxy-dev] testtoolshed.g2.bx.psu.edu not compatible with galaxy-central stable

2013-09-21 Thread Björn Grüning
Hi Greg and Rico, > > > atlas > 3.10.1 > package > Error > cat: ..//CONFIG/src/Makefile: No such file or directory cp: > ..//CONFIG/src/atlcomp.txt: No such file or directory make: *** No rule to > make target `xconfig'. Stop. /bin/sh: line 1: ./xconfig: No such file or > directory Hopeful

Re: [galaxy-dev] testtoolshed.g2.bx.psu.edu not compatible with galaxy-central stable

2013-09-20 Thread Richard Burhans
Greg, I still get the same traceback. The issue is with installing a repository from testtoolshed, which is running code on the default branch, to a galaxy instance running on the stable branch. My understanding was that the default branch is supposed to be backward- compatible to the st

Re: [galaxy-dev] testtoolshed.g2.bx.psu.edu not compatible with galaxy-central stable

2013-09-20 Thread Greg Von Kuster
The "default branch" ( i.e., the galaxy-central repository on bitbucket) is backward compatible to the December 20, 2012 Galaxy release with regard to communication between a Galaxy instance and a Tool Shed instance. It is not guaranteed that this communication will be forward compatible as new

Re: [galaxy-dev] testtoolshed.g2.bx.psu.edu not compatible with galaxy-central stable

2013-09-20 Thread Greg Von Kuster
Hi Rico, The test tool shed is now running my latest commit - 10629:ab20415126a7. I was successful with installing the genome diversity repository and all of it's dependencies using that changeset in my local Galaxy environment (although 3 tool dependencies encountered the following errors whil

[galaxy-dev] testtoolshed.g2.bx.psu.edu not compatible with galaxy-central stable

2013-09-19 Thread Richard Burhans
my galaxy instance: parent: 10587:1f34ec186fcf Pack script. branch: stable commit: 3 modified, 91 unknown update: (current) testtoolshed.g2.bx.psu.edu: parent: 10592:ea0c57f1cdf0 tip Fix for unicode values in rst_to_html. branch: d