Re: [galaxy-dev] Automatic citation list from a tool, workflow, or history

2011-12-15 Thread Sean Davis
On Thu, Dec 15, 2011 at 6:16 AM, Peter Cock p.j.a.c...@googlemail.comwrote: Dear all, It has become a convention that each tool/wrapper in Galaxy includes citation instructions in their help text (although not all the tools do this - I think they should). It occurred to me this could be

Re: [galaxy-dev] Automatic citation list from a tool, workflow, or history

2011-12-15 Thread Peter Cock
Hi Paul, Sean, On Thu, Dec 15, 2011 at 3:09 PM, Paul Gordon gord...@ucalgary.ca wrote: Excellent idea, and the BibTeX comment makes sense too... I'm glad there is enthusiasm for the basic idea :) However, while I am a LaTeX and BibTeX user and fan, I really don't think BibTex is an appropriate

Re: [galaxy-dev] Automatic citation list from a tool, workflow, or history

2011-12-15 Thread Casey Bergman
Peter / Paul - I propose to take this a step farther. How about developing a galaxy tool that uses a history/workflow to write a draft of your methods section using principles from Natural Language Generation [http://en.wikipedia.org/wiki/Natural_language_generation], with relevant citations

Re: [galaxy-dev] Automatic citation list from a tool, workflow, or history

2011-12-15 Thread Bossers, Alex
Onderwerp: Re: [galaxy-dev] Automatic citation list from a tool, workflow, or history Peter / Paul - I propose to take this a step farther. How about developing a galaxy tool that uses a history/workflow to write a draft of your methods section using principles from Natural Language