Re: [galaxy-dev] galaxy local installation

2013-12-13 Thread fernandez Edgar
to take care of the website Cordialement / Regards, Edgar Fernandez De : Carl Eberhard [mailto:carlfeberh...@gmail.com] Envoyé : December-12-13 5:25 PM À : fernandez Edgar Cc : Alistair Chilcott; galaxy-...@bx.psu.edu Objet : Re: [galaxy-dev] galaxy local installation Hello, Edgar - thanks

Re: [galaxy-dev] galaxy local installation

2013-12-12 Thread fernandez Edgar
Hello, Thank you very much for the quick answers. There were very useful. Now I hope I'm not bothering you with a couple more questions. I read more thoroughly the documentation for installing a production environment and I was wondering: 1. Is it possible to run the web server through

Re: [galaxy-dev] galaxy local installation

2013-12-12 Thread Carl Eberhard
Hello, Edgar - thanks for installing Galaxy! Regarding the screenshots: it looks like Galaxy's static css stylesheet isn't being loaded properly. Is this still occurring for you? Do you see anything when you try to go to http://localhost:8080/static/style/base.css in your browser? (You should see

Re: [galaxy-dev] galaxy local installation

2013-12-11 Thread Alistair Chilcott
Edgar, I have been exploring similar outcomes and run into similar issues. I have recently found this post http://seqanswers.com/forums/showthread.php?t=23629 That I'm sure will prove helpful to you. This show how to get it working, including the dependancies and reference genomes .. advice on

Re: [galaxy-dev] galaxy local installation

2013-12-11 Thread Hans-Rudolf Hotz
Hi Edgar please find my comments within your text below: On 12/11/2013 06:30 PM, fernandez Edgar wrote: Hello, My name is Edgar Fernandez. I’m a sys. admin. at University of Montreal. I’ve been ask by a teacher to check out Galaxy. So I’ve installed locally on my computer galaxy (I’m

Re: [galaxy-dev] galaxy local installation

2013-04-09 Thread Nate Coraor
On Apr 8, 2013, at 5:01 PM, Yinan Wan wrote: Hi, I was trying to install the galaxy on my laptop and run into the following error Some eggs are out of date, attempting to fetch... Warning: MarkupSafe (a dependent egg of Mako) cannot be fetched Warning: pycrypto (a dependent egg of

Re: [galaxy-dev] GALAXY LOCAL INSTALLATION: Tools and Data

2013-02-26 Thread Enis Afgan
Hi Rafa, The .loc files in 'tool-data' directory link the index files with the actual paths so you need to configure each of the .loc files to match where the index files are placed. With that, you can put the index files anywhere you'd like on the file system (preferably outside Galaxy's home