Re: [galaxy-dev] Server error from history view

2011-03-11 Thread Sarah Diehl
Hi Isabelle, thank you for your help. However filter-with=gzip is disabled in our configuration. I set everything according to the guide on https://bitbucket.org/galaxy/galaxy-central/wiki/Config/ProductionServer. The gzip option you see in my log is from the Apache server. Sarah On

Re: [galaxy-dev] Upload files from filesystem paths - backwards checkboxes

2011-03-11 Thread Peter Cock
On Thu, Mar 10, 2011 at 5:53 PM, Glen Beane glen.be...@jax.org wrote: On Mar 10, 2011, at 12:24 PM, Peter Cock wrote: Hi all, Via the Galaxy admin interface, I'm currently importing some BAM files into a library from the local file system. Since they are big, I don't want Galaxy to copy

Re: [galaxy-dev] NoneType dereference on the jobs view

2011-03-11 Thread Greg Von Kuster
Hello Ry4an, Thanks for the patch - it's been applied in change set 5214:0b9bba943c8f. Greg Von Kuster On Mar 10, 2011, at 6:15 PM, Ry4an Brase wrote: Intermittently, and always during periods of high load we'll get a 500 Server error from the Admin 'Manage Jobs' list. In the logs the

Re: [galaxy-dev] inputs sanitization...

2011-03-11 Thread Greg Von Kuster
Hi Kostas, look in ~/lib/galaxy/util/__init__.py: # characters that are allowed but need to be escaped mapped_chars = { '' :'__gt__', '' :'__lt__', ' :'__sq__', '' :'__dq__', '[' :'__ob__', ']' :'__cb__',

Re: [galaxy-dev] Upload files from filesystem paths - backwards checkboxes

2011-03-11 Thread Greg Von Kuster
Hello Peter, Thanks for the patch - I've applied a corrected version of it in change set 5215:74c4dd43485a. Let me know if you'd rather have me flip the Copy data into Galaxy? feature. I'd be happy to, but I don't want to reinvent the wheel if you're close. Thanks! Greg Von Kuster On

Re: [galaxy-dev] Upload files from filesystem paths - backwards checkboxes

2011-03-11 Thread Peter Cock
On Fri, Mar 11, 2011 at 3:04 PM, Greg Von Kuster g...@bx.psu.edu wrote: Hello Peter, Thanks for the patch - I've applied a corrected version of it in change set 5215:74c4dd43485a.  Let  me know if you'd rather have me flip the Copy data into Galaxy? feature.  I'd be happy to, but I don't

[galaxy-dev] Connecting Galaxy to multiple Remote Clusters?

2011-03-11 Thread Joe Cruz
Hello, I've read through past emails that connecting Galaxy to a remote cluster is possible but I wanted to ask if it was possible to setup Galaxy as a standalone webserver and have it use multiple remote clusters (multiple head nodes each with their own compute nodes) and if so what the best

[galaxy-dev] Login problem.

2011-03-11 Thread Luobin Yang
Dear Galaxy development team, I've got a problem using the login function of Galaxy. So I downloaded a copy of Galaxy distribution and installed it on a local machine, then I installed PostgreSQL on this machine and made the necessary changes to the universe_wsgi.ini file and Galaxy is able to

Re: [galaxy-dev] Upload files from filesystem paths - backwards checkboxes

2011-03-11 Thread Greg Von Kuster
Hi Peter, This has been resolved in change set 5217:70d7d0bfaad6, where I've changed the check box into a select list per your suggestion. Thanks! Greg Von Kuster On Mar 10, 2011, at 12:24 PM, Peter Cock wrote: Hi all, Via the Galaxy admin interface, I'm currently importing some BAM