Re: [galaxy-dev] [API] About workflow parameters :)

2011-08-09 Thread Louise-Amélie Schmitt
Hi Jen, Hum.. what is a bitbucket ticket? How do you get there? There's no real hurry anyway, as far as I'm concerned. I made API-versions of the tools I need where the python wrapper gets the needed parameters from a database. But yeah, I'm still very interested in how the API evolves. By

[galaxy-dev] What happened to 'normal' priority on the issue tracker?

2011-08-09 Thread Peter Cock
Hi all, I'm just filing a bug on bitbucket, and noticed the default priority is now major (!) We can choose: Trivial, Minor, Major, Critical, Blocker Wasn't there previously a 'Normal' which was the default? Peter ___ Please keep all

Re: [galaxy-dev] Catch problems preparing cluster job scripts

2011-08-09 Thread Peter Cock
Hi Jen, On Fri, Aug 5, 2011 at 8:27 PM, Jennifer Jackson j...@bx.psu.edu wrote: Hi Peter, Yes, if you wanted to create a ticket in bitbucket for this patch that would be great. It is the best way to help us to keep track/prioritize. Please just submit, but don't change status from new or

Re: [galaxy-dev] Tool Config Syntax Wiki page, actions tag

2011-08-09 Thread Peter Cock
On Fri, Aug 5, 2011 at 4:19 PM, Jennifer Jackson j...@bx.psu.edu wrote: Thanks Peter, The wiki has been corrected, please let us know if you find anything else in the current wiki. This was likely from the migration. The next updated version of the public wiki is coming soon! Best, Jen

Re: [galaxy-dev] [API] About workflow parameters :)

2011-08-09 Thread Jennifer Jackson
Hello L-A, On 8/9/11 12:06 AM, Louise-Amélie Schmitt wrote: Hi Jen, Hum.. what is a bitbucket ticket? How do you get there? http://bitbucket.org/galaxy/galaxy-central/src Tickets are created the same place that the galaxy-central source repository is located. Click on the Issues tag to see

Re: [galaxy-dev] Catch problems preparing cluster job scripts

2011-08-09 Thread Jennifer Jackson
Hi Peter, On 8/9/11 2:55 AM, Peter Cock wrote: Hi Jen, more To remind others (readers of this email), bitbucket is not intended to replace the mailing lists for suspected bugs/bug reports, questions, or general discussion. http://galaxyproject.org/Support Could you clarify that bit on the

Re: [galaxy-dev] invalid password

2011-08-09 Thread Jennifer Jackson
Hello Sohail, Just as a start, if you have already followed the production server set up procedures, double check that you are using the email address (and not the user name) when logging into the UI form. If that does not solve the admin login issue, is likely that you need to do some more

Re: [galaxy-dev] invalid password

2011-08-09 Thread Jennifer Jackson
Hello Sohail, The universe_wsgi.ini for admin is correct. Have you registered through the UI yet? Once registered and logged in with these same credentials, the account should be granted admin permissions. Jen On 8/9/11 11:25 AM, sohk...@notes.cc.sunysb.edu wrote: Thanks Jennifer, I login

Re: [galaxy-dev] invalid password

2011-08-09 Thread sohkhan
Thanks Jennifer, I login with my e-mail,I have admin_users=my_email and admin_pass=my_password setup in universe_wsgi.ini. However, I am not sure if this correct. What is the admin password when you login for the first time? -Sohail From: Jennifer Jackson j...@bx.psu.edu To:

Re: [galaxy-dev] how is metadata generated

2011-08-09 Thread Jennifer Jackson
Hello, Metadata is associated with each dataset based on the datatype when loaded into Galaxy (detected or assigned) and other inputs from tools. This wiki document explains how tools generate, organize, and use data and should help to address your question.

Re: [galaxy-dev] invalid password

2011-08-09 Thread sohkhan
Hi Jennifer, Problem solved! I hadn't registered through UI. Thanks for your help. -Sohail From: Jennifer Jackson j...@bx.psu.edu To: sohk...@notes.cc.sunysb.edu Cc: galaxy-dev@lists.bx.psu.edu Date: 08/09/2011 02:48 PM Subject:Re: [galaxy-dev] invalid password Hello

[galaxy-dev] cant' run galaxy in daemon mode

2011-08-09 Thread sohkhan
Hi, I have the production Galaxy setup and running on Mac OS Leopard 10.6, with postgres and apache. However, I am unable to run it as daemon. I don't get an error, the browser just hangs there. Thanks for any advice. -Sohail ___ Please