OK, we've made some progress. When we try to do uploads (or, I think,
switch histories from the User-Saved Histories page), we get an error
from get_history in
/www/galaxy.hms.harvard.edu/support/galaxy-dist/lib/galaxy/web/framework/__
init__.py
The code that makes it is:
# Perhaps a bot is
Oh,
I forgot to mention it:
hg18.fa.fai is already in tool-data/shared/ucsc/hg18/sam_index/ as a link to
tool-data/shared/ucsc/hg18/seq
Replacing the link with the actual file did not help (not suprising).
regards, Andreas
On 01.11.2012 17:56, Dave Bouvier wrote:
Andreas,
I recommend
On 11/02/2012 02:20 PM, Vladimir Yamshchikov wrote:
Someone has advised also that SQLite, which is the default option,
is not adequate for serious work. Is this something I need to
change too?
Indeed, see:
http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Production%20Server
I mean
On Nov 1, 2012, at 4:22 PM, Carlos Borroto carlos.borr...@gmail.com wrote:
Hi,
I've been researching the possibility of using dynamic job runner in
combination with job splitting for blast jobs. My main interest is to
create a rule where both the size of the query and the database are
Hi Alex,
On Fri, Nov 2, 2012 at 9:53 AM, Oleksandr Moskalenko o...@hpc.ufl.edu wrote:
The dynamic runner is alive and well thanks to the continuous work of the
author John Chilton and others. For instance, yesterday John committed code
to galaxy-central that propagates tracebacks from the
On Fri, Nov 2, 2012 at 3:58 PM, Carlos Borroto carlos.borr...@gmail.com wrote:
On Fri, Nov 2, 2012 at 9:53 AM, Oleksandr Moskalenko o...@hpc.ufl.edu wrote:
The dynamic runner is alive and well thanks to the continuous work of the
author John Chilton and others. For instance, yesterday John
On Nov 2, 2012, at 4:42 PM, Carlos Borroto carlos.borr...@gmail.com wrote:
On Fri, Nov 2, 2012 at 3:58 PM, Carlos Borroto carlos.borr...@gmail.com
wrote:
On Fri, Nov 2, 2012 at 9:53 AM, Oleksandr Moskalenko o...@hpc.ufl.edu
wrote:
The dynamic runner is alive and well thanks to the
On Nov 2, 2012, at 3:58 PM, Carlos Borroto carlos.borr...@gmail.com wrote:
Please, could you share your rules related to blast. I would love to
take a look at them.
Thanks,
Carlos
Here is the blastn rule procedure code and the relevant snippet of the default
runner procedure. I just
