Hi,
we are currently working on a few graph based tools and we would like to
add some new graph-datatypes, namely: gspan, gml, gexf, graphml, pajek.
I saw that xgmml and sif are already integrated into core-galaxy and I'm
wondering if a PR with these new datatypes would be appropriate or a
Hello all,
Currently the Test Tool Shed seems not to be flagging
all tools with missing tests. For example, the following
currently lack tests yet are not listed under Latest
revision: missing tool tests but instead under
Latest revision: all tool tests pass:
Hi peter,
Thanks for reposrting this. I've created the follwoing Trello card for this
issue, and we'll get it taken care of asap.
https://trello.com/c/rArkn49z/173-incorrect-tool-test-results-for-tools-missing-tool-test-components
Gfreg Von Kuster
On Mar 3, 2014, at 8:38 AM, Peter Cock
Hey Jun,
Thanks for your continued interest in the LWR. Responses inline.
On Sun, Mar 2, 2014 at 7:00 PM, Jun Fan j@qmul.ac.uk wrote:
Hi all,
LWR sounds very attractive and promising. However how to program on
galaxy side to utilize LWR server is not thoroughly documented.
Hi Tool Shed Team!
I know I'm always finding bugs and keeping you busy, but this mail is
different!
The Tool Shed exporting and importing feature is just great, its save so
much time and is a pleasure to use. Everyone should try it!
So thanks for the hard work you all put into the Tool Shed
Many thanks, Björn for your very kind words. The Tool Shed would not be what
it is without your hard work as well. We hoped the export/import capsule
feature would be beneficial, so it's great to hear confirmation that it is.
Also, please don't hesitate to continue to contact us with newly
Hi Guys,
Is this stuff on the wiki? Presumably the goal is helping to
move repositories between Tool Shed instances (e.g. from
a development/private Tool Shed to a production/public
Tool Shed)?
I can see Import repository capsule as a new action at the
bottom of the left hand column (under
On Mar 3, 2014, at 1:13 PM, Peter Cock p.j.a.c...@googlemail.com wrote:
Hi Guys,
Is this stuff on the wiki?
Not completely yet.
Presumably the goal is helping to
move repositories between Tool Shed instances (e.g. from
a development/private Tool Shed to a production/public
Tool
Hey, Bjoern
Not sure whether a pull request or a toolshed repo would be best, but: if
you decide on a toolshed repo, graphview as it is should be able to use
your datatypes if they include a 'node-edge' dataprovider.
Also, graphview is on my list - but most likely I won't get to it in the
near
Following the directions from here: https://wiki.galaxyproject.org/Admin/Config/Performance/Cluster#PBS
I'm trying to get pbs_python to work as I'm using torque for
scheduling galaxy jobs.
Note: This is a fresh install of galaxy from galaxy-dist on CentOS
5.10
Dear Sir or Madam,
We have installed our local Galaxy server and everything looks fine.
But there are some issues with reference genome index.
The BWA and Mageblast is working. Here is how bwa_index.loc looks like:
hg18fullhg18Human (Homo sapiens): hg18 Full
Hi guys,
I am new to galaxy and am in the process of setting it up on a cluster with
some help. I am trying to install bowtie2 to my local galaxy through the
toolshed. I have a few questions.
- Which bowtie2 should I install? When I search for bowtie2 a bunch of results
come up?
- What are
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