[galaxy-dev] New tool listed under Latest revision: failing tool tests yet not tested

2014-05-16 Thread Peter Cock
Hi Dave et al, Yesterday I uploaded a new tool to the TestToolShed: http://testtoolshed.g2.bx.psu.edu/view/peterjc/blast_rbh Development repository: https://github.com/peterjc/galaxy_blast/tree/master/tools/blast_rbh It is currently listed under Latest revision: failing tool tests, Name Latest

Re: [galaxy-dev] New tool listed under Latest revision: failing tool tests yet not tested

2014-05-16 Thread Greg Von Kuster
Hi Peter, I doscovered an error in the query filters that are used for rendering these various Latest revision: lists. The problem was that the filters were not correctly determining whether the revisions had been tested yet by the install and test framework. This problem should be fixed in

Re: [galaxy-dev] New tool listed under Latest revision: failing tool tests yet not tested

2014-05-16 Thread Peter Cock
Great - thanks Greg, Peter On Fri, May 16, 2014 at 2:59 PM, Greg Von Kuster g...@bx.psu.edu wrote: Hi Peter, I doscovered an error in the query filters that are used for rendering these various Latest revision: lists. The problem was that the filters were not correctly determining

[galaxy-dev] nginx configuration question

2014-05-16 Thread ruiwang.sz
Hi All, I have been trying to get the visualization through ucsc main working, thus I installed the nginx on our ubuntu(the one comes with update), then I configured it according to the wiki https://wiki.galaxyproject.org/Admin/Config/nginxProxy Here is the section in my nginx.conf

[galaxy-dev] Fwd: InvalidVersionError: 103 is not 105

2014-05-16 Thread Evan Bollig
I have an empty posgresql database: psql -c create database galaxy; I'm trying to launch run.sh from the latest version of galaxy-dist. Migration proceeds normally up to this point: # galaxy.model.migrate.check INFO 2014-05-16 19:11:17,121 galaxy.model.migrate.check INFO 2014-05-16

Re: [galaxy-dev] Fwd: InvalidVersionError: 103 is not 105

2014-05-16 Thread Dannon Baker
On Fri, May 16, 2014 at 3:33 PM, Evan Bollig boll0...@umn.edu wrote: InvalidVersionError: 103 is not 105 This would indicate to me that migration script 104 failed. My question is: why can't the manage_db.sh upgrade step be included automatically when the initial DB build fails? It is, in