[galaxy-dev] cufflinks libz error/warning
Hi all - I'm running Galaxy on my Redhat linux cluster. When I run cufflinks from the shell I get the error/warning: cufflinks: /usr/lib64/libz.so.1: no version information available (required by cufflinks) but it still seems to run ok. It looks like Galaxy is choking on this. I tried compling cufflinks manually but that was more troublesome. Is there a way I can get Galaxy to ignore this error and continue? -- CONFIDENTIALITY NOTICE: This email communication may contain private, confidential, or legally privileged information intended for the sole use of the designated and/or duly authorized recipient(s). If you are not the intended recipient or have received this email in error, please notify the sender immediately by email and permanently delete all copies of this email including all attachments without reading them. If you are the intended recipient, secure the contents in a manner that conforms to all applicable state and/or federal requirements related to privacy and confidentiality of such information. attachment: golharam.vcf___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] cufflinks libz error/warning
Hi all - I'm running Galaxy on my Redhat linux cluster. When I run cufflinks from the shell I get the error/warning: cufflinks: /usr/lib64/libz.so.1: no version information available (required by cufflinks) but it still seems to run ok. It looks like Galaxy is choking on this. I tried compling cufflinks manually but that was more troublesome. Is there a way I can get Galaxy to ignore this error and continue? Ryan, There's currently no way to tell Galaxy to ignore some error messages and not others; we're working on this functionality but it's far from being done*. Unfortunately, your best bet is to compile Cufflinks on your system. FYI, here's a technical description of this problem: http://seqanswers.com/forums/showthread.php?t=8042 *To detect particular errors, we envision XML elements in a tool's output definition that use regular expressions to identify errors amongst a program's output. We think this is the right approach, but we haven't started implementing it yet. You are welcome to do so; we welcome code contributions from the community. Thanks, J. ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] importing into history from library
This is likely fixed in templates/library/common/browse_library.mako in the development source: https://bitbucket.org/galaxy/galaxy-central/changeset/5f5dae7e7ccc ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Missing Page Editor Components
However, when I tried to use the Edit Pages function, there is no Embed Galaxy Object and Insert Link to Galaxy Object in the Page Editor. I have set the enable_pages = True in universe_wsgi.ini. Wonder what else can cause the problem? Charlie, This bug has been fixed in galaxy-central changeset r5231:642f1f9e5e3a Also, is there any documentations for the control syntax used in datatypes and tools configure xmls? Datatypes: https://bitbucket.org/galaxy/galaxy-central/wiki/AddingDatatypes Tool config: https://bitbucket.org/galaxy/galaxy-central/wiki/ToolConfigSyntax Best, J. ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
