Re: [galaxy-dev] [galaxy-user] postgres version 9.0.3

2011-03-19 Thread Dannon Baker
Martin, There were a few issues with postgres 9 that were fixed in changeset 5074, what revision is your galaxy instance running? If you are running something newer than that, could you explain more explicitly the steps to reproduce the server error? Also, I've moved the thread to galaxy-dev

Re: [galaxy-dev] [galaxy-user] postgres version 9.0.3

2011-03-19 Thread Martin Senger
Thanks for an answer and for moving it to the proper mailing list. There were a few issues with postgres 9 that were fixed in changeset 5074, what revision is your galaxy instance running? I am still running the stable version (galaxy-dist branch). I guess that with this version I need to

[galaxy-dev] Galaxy prone to XSS and HTML injection attacks

2011-03-19 Thread Paul, Rohit (NIH/NCI) [C]
We recently ran a Nessus vulnerability scan against our server that hosts a local installation of Galaxy. The scan report showed that the web application is vulnerable to XSS and HTML injection attacks. In order to determine if/when these vulnerabilities will be fixed, where should I either

Re: [galaxy-dev] Galaxy prone to XSS and HTML injection attacks

2011-03-19 Thread Dannon Baker
I'd be happy to review the scan results, feel free to send them to me. I'll share it with the rest of the team as well. Thanks! -Dannon On Mar 19, 2011, at 11:37 AM, Paul, Rohit (NIH/NCI) [C] wrote: We recently ran a Nessus vulnerability scan against our server that hosts a local

[galaxy-dev] DB access and passowrd field

2011-03-19 Thread Bossers, Alex
Hi All, I have some tools that generate some tabular output. The next step is to aggregate the data for some filtering and analysis. In my view the best way to do by using a DB (MySQL in my case). Tools and cmd line wrappers can easily connect to this DB (another database than galaxy is using