I recall at the Galaxy conf there were questions on how secure this is (having
the 'galaxy' user submit jobs as someone else). This would involve switching
users on the cluster or would require user login information, correct?
The way we planned on working around this was to just specify a user
So it looks like for some reason galaxy is not picking up the information in
the .e file. Not sure why. I even switched it back to writing the files to the
pbs directory and it still did not pick up the .e files. BWA was core dumping
but I was not given the error message in galaxy.
BTW, I find
Hi, Jesse.
>Yep, that's what I meant. Meaning that if I set that on my HTML file,
>the extra_files would hopefully pick up the metadata from the
>metadata_source.
AFAIK, not possible. No metadata is stored anywhere in the Galaxy
database tables for any of the files *inside* an html object
files_
Excerpts from Hotz, Hans-Rudolf's message of 2011-11-01 09:42:38 +:
> Well, I am not a linux system expert, but I don't see a reason, why you
> can't run Galaxy from an external drive as long as it is mounted correctly
> and you have all the read and write permissions.
Also, if you want galaxy
On Tue, Nov 1, 2011 at 9:07 AM, Ross wrote:
> On Tue, Nov 1, 2011 at 9:51 AM, Jesse Erdmann wrote:
>> files visible in the first place and hide and link to the other items
>> generated that aren't as likely to be reused is subsequent tasks. The
>
> That sounds like a good way to use Html outputs
On Tue, Nov 1, 2011 at 9:51 AM, Jesse Erdmann wrote:
> files visible in the first place and hide and link to the other items
> generated that aren't as likely to be reused is subsequent tasks. The
That sounds like a good way to use Html outputs - use the html history
item to hide all the 'inform
Sorry, I think I went a little too deep into the weeds and lost my way
there last night. I think the answer is to just leave the BED/WIG
files visible in the first place and hide and link to the other items
generated that aren't as likely to be reused is subsequent tasks. The
metadata, like which
The easiest way is for you to issue a bitbucket pull request.
http://confluence.atlassian.com/display/BITBUCKET/Forking+a+Bitbucket+Repository#ForkingaBitbucketRepository-Step-by-StepExampleNowthePullRequest
Thanks for the contribution!
-Dannon
On Nov 1, 2011, at 5:16 AM, Hanfei Sun wrote:
>
Hi Alessia
Well, I am not a linux system expert, but I don't see a reason, why you
can't run Galaxy from an external drive as long as it is mounted correctly
and you have all the read and write permissions.
The basic installation of Galaxy does not need any modification. The
configuration files a
Hi, all
I'm from China and was interested in the i18n of galaxy.
I wrote 4 locale files such as ginga.po/mo and tools.po/mo ,tried them
on my server and it worked well.
I want to contribute it to the galaxy repository but don't know how to
do that because I don't have the permission to push
10 matches
Mail list logo